ggKbase home page

L3_068_000M1_scaffold_298

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_298_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

590..1219
DNA (630bp) protein (210aa)
MATE efflux family protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBY2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EES77276.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
putative efflux protein, MATE family
L3_068_000M1_scaffold_298_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1477..3507)
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79573.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
membrane protein
L3_068_000M1_scaffold_298_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3922..4176
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LX82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM99409.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000M1_scaffold_298_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4075..5259)
DNA (1185bp) protein (395aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77274.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_000M1_scaffold_298_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5651..5953
DNA (303bp) protein (101aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Urease subunit gamma n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBX9_9FIRM
UreA; urea amidohydrolase
L3_068_000M1_scaffold_298_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5968..6327
DNA (360bp) protein (120aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Urease subunit beta n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNP9_9FIRM
UreB; urea amidohydrolase
L3_068_000M1_scaffold_298_7
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6340..8061
DNA (1722bp) protein (574aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Urease subunit alpha n=2 Tax=Ruminococcus RepID=C6JBX8_9FIRM
UreC; urea amidohydrolase
L3_068_000M1_scaffold_298_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8318..8824
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77271.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_000M1_scaffold_298_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8845..9321
DNA (477bp) protein (159aa)
Urease accessory protein UreE n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPJ8_9FIRM
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
UreE; urease accessory protein UreE
L3_068_000M1_scaffold_298_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9423..10115
DNA (693bp) protein (231aa)
Urease accessory protein UreF n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBX5_9FIRM
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
UreF; urease accessory protein UreF
L3_068_000M1_scaffold_298_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10268..10876
DNA (609bp) protein (203aa)
Urease accessory protein UreG n=2 Tax=Ruminococcus RepID=C6JBX4_9FIRM
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
HypB; Ni2+-binding GTPase
L3_068_000M1_scaffold_298_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10883..11749
DNA (867bp) protein (289aa)
Urease accessory protein UreD n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPJ3_9FIRM
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
UreH; urease accessory protein UreH
L3_068_000M1_scaffold_298_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11909..13996
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79855.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LacI family transcriptional regulator
L3_068_000M1_scaffold_298_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14285..15100
DNA (816bp) protein (272aa)
Family 2 AP endonuclease n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNN9_9FIRM
Family 2 AP endonuclease {ECO:0000313|EMBL:CDD79854.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
xylose isomerase
L3_068_000M1_scaffold_298_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15123..16199
DNA (1077bp) protein (359aa)
Sugar ABC superfamily ATP binding cassette transporter binding protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPI8_9FIRM
Sugar ABC superfamily ATP binding cassette transporter binding protein {ECO:0000313|EMBL:CDD79851.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
two-component sensor histidine kinase/response regulator
L3_068_000M1_scaffold_298_16
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16231..17733
DNA (1503bp) protein (501aa)
ABC transporter, ATP-binding protein n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LSC3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFU75264.1}; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
ABC transporter-like protein
L3_068_000M1_scaffold_298_17
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17714..18676
DNA (963bp) protein (321aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LSC2_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFU75263.1}; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
L3_068_000M1_scaffold_298_18
Lachnoanaerobaculum saburreum, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18788..19963
DNA (1176bp) protein (392aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Lachnoanaerobaculum saburreum DSM 3986 RepID=E6LSC1_9FIRM
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EFU75262.1}; TaxID=887325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum saburreum DSM 3986.;"
oxidoreductase domain-containing protein
L3_068_000M1_scaffold_298_19
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

20017..21045
DNA (1029bp) protein (343aa)
Oxidoreductase domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TT62_THETC
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ADL68204.1}; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM; 571 / NCIB 9385 / NCA 3814) (Clostridium thermosaccharolyticum).;"
L3_068_000M1_scaffold_298_20
Mitsuokella multacida, Mitsuokella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21062..21979
DNA (918bp) protein (306aa)
AP endonuclease, family 2 n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQL8_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:EEX67794.1}; TaxID=500635 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Mitsuokella.;" source="Mitsuokella multacida DSM 20544.;"
sugar phosphate isomerases/epimerase
L3_068_000M1_scaffold_298_21
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22010..23194
DNA (1185bp) protein (395aa)
oxidoreductase family protein (EC:1.-.-.-)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000360760A
Uncharacterized protein {ECO:0000313|EMBL:EMZ24419.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
L3_068_000M1_scaffold_298_22
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23555..24922
DNA (1368bp) protein (456aa)
MATE efflux family protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BCY7_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EDM64304.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_068_000M1_scaffold_298_23
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25111..26172
DNA (1062bp) protein (354aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LR85_9FIRM
ABC-type sugar transport system, periplasmic component
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CBL23293.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_068_000M1_scaffold_298_24
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26313..27809
DNA (1497bp) protein (499aa)
ABC-type sugar transport system, ATPase component (EC:3.6.3.17)
ABC transporter, ATP-binding protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZLZ7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDM88891.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_068_000M1_scaffold_298_25
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27809..28822
DNA (1014bp) protein (338aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Clostridiales RepID=A5ZLZ6_9FIRM
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:CDD87060.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
L3_068_000M1_scaffold_298_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28974..29327)
DNA (354bp) protein (118aa)
ArsC family transcriptional regulator n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000312235F
Spx/MgsR family transcriptional regulator {ECO:0000313|EMBL:EES77262.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_000M1_scaffold_298_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29530..30501
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77261.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_000M1_scaffold_298_28
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30639..31031)
DNA (393bp) protein (131aa)
C_GCAxxG_C_C family protein n=2 Tax=Ruminococcus RepID=C6JBW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78348.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
C_GCAxxG_C_C family probable redox protein
L3_068_000M1_scaffold_298_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31347..32210
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77259.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L3_068_000M1_scaffold_298_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32357..33214
DNA (858bp) protein (286aa)
Phosphate ABC transporter, permease PstC n=2 Tax=Ruminococcus RepID=C6JBW4_9FIRM
Phosphate ABC transporter, permease PstC {ECO:0000313|EMBL:EES77258.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
Displaying items 1-30 of 61 in total

View Taxonomy