ggKbase home page

L3_068_000M1_scaffold_420

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_420_1
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

128..253
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9J3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10387.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_068_000M1_scaffold_420_2
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

267..1169
DNA (903bp) protein (301aa)
TIGR00159 family protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6X4_9CLOT
TIGR00159 family protein {ECO:0000313|EMBL:CDE10386.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
hypothetical protein
L3_068_000M1_scaffold_420_3
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1239..1493
DNA (255bp) protein (85aa)
Preprotein translocase subunit SecG n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6A8_9CLOT
Preprotein translocase subunit SecG {ECO:0000313|EMBL:CDE10385.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
secG; preprotein translocase subunit SecG
L3_068_000M1_scaffold_420_4
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1645..3609
DNA (1965bp) protein (655aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
Ribonuclease R n=1 Tax=Clostridium sp. CAG:354 RepID=R7F543_9CLOT
ribonuclease R
L3_068_000M1_scaffold_420_5
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3650..3814)
DNA (165bp) protein (55aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F7B6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10383.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_068_000M1_scaffold_420_6
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3824..5062)
DNA (1239bp) protein (413aa)
Germination protein Ger(X)C family n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9I8_9CLOT
Germination protein Ger(X)C family {ECO:0000313|EMBL:CDE10382.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
Ger(x)C family germination protein
L3_068_000M1_scaffold_420_7
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5046..6152)
DNA (1107bp) protein (369aa)
Spore germination protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6X0_9CLOT
Spore germination protein {ECO:0000313|EMBL:CDE10381.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
spore germination protein
L3_068_000M1_scaffold_420_8
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6145..7827)
DNA (1683bp) protein (561aa)
GerA spore germination protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6A3_9CLOT
GerA spore germination protein {ECO:0000313|EMBL:CDE10380.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
GerA spore germination protein
L3_068_000M1_scaffold_420_9
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8084..9205
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F538_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10379.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
Transglutaminase-like superfamily
L3_068_000M1_scaffold_420_10
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9365..10360
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F7B4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10378.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_068_000M1_scaffold_420_11
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10499..11977)
DNA (1479bp) protein (493aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
Stage IV sporulation protein A n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6W6_9CLOT
stage IV sporulation protein A
L3_068_000M1_scaffold_420_12
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12146..13399
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine pyrophosphorylase n=1 Tax=Clostridium sp. CAG:354 RepID=R7F697_9CLOT
UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000313|EMBL:CDE10375.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
UDP-N-acetylglucosamine pyrophosphorylase
L3_068_000M1_scaffold_420_13
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13386..14054
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F534_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10374.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
hypothetical protein
L3_068_000M1_scaffold_420_14
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14141..14518)
DNA (378bp) protein (126aa)
Membrane protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F7B0_9CLOT
Membrane protein {ECO:0000313|EMBL:CDE10373.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
membrane protein
L3_068_000M1_scaffold_420_15
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14643..15329
DNA (687bp) protein (229aa)
Putative membrane protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9I2_9CLOT
Putative membrane protein {ECO:0000313|EMBL:CDE10372.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
hypothetical protein
L3_068_000M1_scaffold_420_16
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15322..15711
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6W3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10371.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_068_000M1_scaffold_420_17
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15892..16224
DNA (333bp) protein (111aa)
UPF0122 protein BN623_00075 n=1 Tax=Clostridium sp. CAG:354 RepID=R7F692_9CLOT
UPF0122 protein BN623_00075 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
hypothetical protein
L3_068_000M1_scaffold_420_18
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16240..17589
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F531_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
signal recognition particle subunit FFH/SRP54 (srp54)
L3_068_000M1_scaffold_420_19
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17643..17882
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:354 RepID=R7F7A6_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
rpsP; 30S ribosomal protein S16
L3_068_000M1_scaffold_420_20
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17901..18131
DNA (231bp) protein (77aa)
UPF0109 protein BN623_00072 n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9H6_9CLOT
UPF0109 protein BN623_00072 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
UPF0109 protein
L3_068_000M1_scaffold_420_21
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18143..18646
DNA (504bp) protein (168aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6W1_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
16S rRNA processing protein RimM
L3_068_000M1_scaffold_420_22
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18655..19389
DNA (735bp) protein (245aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:354 RepID=R7F687_9CLOT
tRNA (guanine-N1)-methyltransferase
L3_068_000M1_scaffold_420_23
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19389..19895
DNA (507bp) protein (169aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:354 RepID=R7F527_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
ribosomal protein L19, bacterial type
L3_068_000M1_scaffold_420_24
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20002..20385
DNA (384bp) protein (128aa)
Predicted transcriptional regulator arsE family n=1 Tax=Clostridium sp. CAG:354 RepID=R7F7A3_9CLOT
Predicted transcriptional regulator arsE family {ECO:0000313|EMBL:CDE10363.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
ArsR family transcriptional regulator
L3_068_000M1_scaffold_420_25
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20372..22246
DNA (1875bp) protein (625aa)
Cadmium-exporting ATPase n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9H2_9CLOT
Cadmium-exporting ATPase {ECO:0000313|EMBL:CDE10362.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
cadmium-translocating P-type ATPase
L3_068_000M1_scaffold_420_26
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22382..23689
DNA (1308bp) protein (436aa)
MiaB family protein possibly involved in tRNA or rRNA modification n=1 Tax=Clostridium sp. CAG:354 RepID=R7F6V7_9CLOT
MiaB family protein possibly involved in tRNA or rRNA modification {ECO:0000313|EMBL:CDE10361.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
MiaB; 2-methylthioadenine synthetase
L3_068_000M1_scaffold_420_27
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23741..23857
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F682_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10360.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_068_000M1_scaffold_420_28
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23850..24416
DNA (567bp) protein (189aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:354 RepID=R7F521_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDE10359.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
transcriptional regulator, TetR family
L3_068_000M1_scaffold_420_29
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24551..25504
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F799_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE10358.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_068_000M1_scaffold_420_30
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26428..27327
DNA (900bp) protein (300aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F9G8_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:CDE10357.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
hypothetical protein
Displaying items 1-30 of 58 in total

View Taxonomy