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L3_068_000M1_scaffold_1468

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1468_1
unknown

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2..73
DNA (72bp) protein (24aa)

This feature has no annotations

L3_068_000M1_scaffold_1468_2
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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104..1507
DNA (1404bp) protein (468aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N5L0_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH05525.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
L3_068_000M1_scaffold_1468_3
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1580..2026)
DNA (447bp) protein (149aa)
Prepilin peptidase-dependent n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CFH1_9CLOT
Prepilin peptidase-dependent {ECO:0000313|EMBL:EOR28099.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
L3_068_000M1_scaffold_1468_4
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2139..3086)
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BKJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO84845.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
Lysophospholipase
L3_068_000M1_scaffold_1468_5
Helicobacter cetorum, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(3112..4287)
DNA (1176bp) protein (392aa)
Type I restriction-modification system, M subunit n=1 Tax=Helicobacter cetorum (strain ATCC BAA-540 / MIT 99-5656) RepID=I0ER77_HELCM
type I restriction-modification system, M subunit
Type I restriction-modification system, M subunit {ECO:0000313|EMBL:AFI05446.1}; TaxID=1163745 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter cetorum (strain ATCC BAA-540 / MIT 99-5656).;"
L3_068_000M1_scaffold_1468_6
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4658..6715)
DNA (2058bp) protein (686aa)
Ferrous iron transport protein B n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N2I0_9CLOT
ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:AGF57672.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_068_000M1_scaffold_1468_7
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6716..6943)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MN94_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF57673.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_068_000M1_scaffold_1468_8
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7181..8710
DNA (1530bp) protein (510aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JRN7_CELLD
multi-sensor signal transduction histidine kinase
L3_068_000M1_scaffold_1468_9
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8716..9423
DNA (708bp) protein (236aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KJX4_CLOPH
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABX41129.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_068_000M1_scaffold_1468_10
unknown

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comp(9556..9762)
DNA (207bp) protein (69aa)

This feature has no annotations

L3_068_000M1_scaffold_1468_11
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9859..11022)
DNA (1164bp) protein (388aa)
Poly(A) polymerase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G409_CLOPA
Poly(A) polymerase {ECO:0000313|EMBL:ETD71264.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
PolyA polymerase-like protein
L3_068_000M1_scaffold_1468_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11028..11831)
DNA (804bp) protein (268aa)
DNA ligase-like protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MM25_CLOSA
DNA ligase-like protein
DNA ligase-like protein {ECO:0000313|EMBL:AGX41859.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_068_000M1_scaffold_1468_13
unknown

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comp(12853..13008)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_068_000M1_scaffold_1468_14
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13036..13479)
DNA (444bp) protein (148aa)
Transcriptional regulator AsnC family n=1 Tax=Clostridium sp. CAG:221 RepID=R6GM70_9CLOT
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:CDM68968.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L3_068_000M1_scaffold_1468_15
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13882..14916
DNA (1035bp) protein (345aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=8 Tax=Clostridium perfringens RepID=H7CWP9_CLOPF
L3_068_000M1_scaffold_1468_16
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15198..15704)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q4K2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY22898.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
L3_068_000M1_scaffold_1468_17
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15934..18192)
DNA (2259bp) protein (753aa)
malP; Maltodextrin phosphorylase (EC:2.4.1.1)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587, ECO:0000313|EMBL:CDM67579.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
Phosphorylase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSF0_CLOBU
L3_068_000M1_scaffold_1468_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18681..20933)
DNA (2253bp) protein (751aa)
Glycosidases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E190_9FIRM
Glycosidases {ECO:0000313|EMBL:CCX82542.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Glycosidases
L3_068_000M1_scaffold_1468_19
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21273..22691)
DNA (1419bp) protein (473aa)
Biotin and thiamin synthesis associated n=1 Tax=Clostridium sp. DL-VIII RepID=G7LY57_9CLOT
Biotin and thiamin synthesis associated {ECO:0000313|EMBL:EHI97881.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
thiH2; thiamine biosynthesis protein ThiH
L3_068_000M1_scaffold_1468_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22731..22982)
DNA (252bp) protein (84aa)
Putative iron-only hydrogenase system regulator n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQ11_CLOSA
putative iron-only hydrogenase system regulator
Putative iron-only hydrogenase system regulator {ECO:0000313|EMBL:AGX41776.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_068_000M1_scaffold_1468_21
unknown

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comp(23195..23680)
DNA (486bp) protein (162aa)

This feature has no annotations

L3_068_000M1_scaffold_1468_22
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23855..24514)
DNA (660bp) protein (220aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UC47_9CLOT
Haloacid dehalogenase superfamily enzyme, subfamily IA {ECO:0000313|EMBL:EKQ58179.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
HAD family hydrolase
L3_068_000M1_scaffold_1468_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24542..24907)
DNA (366bp) protein (122aa)
Transcriptional regulator n=2 Tax=Clostridium butyricum RepID=C4ICA5_CLOBU
Transcriptional regulator {ECO:0000313|EMBL:EEP56051.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
penicillinase repressor
Displaying 23 items

View Taxonomy