ggKbase home page

L3_068_000M1_scaffold_1891

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1891_1
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..379
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum Bf RepID=B1QGC6_CLOBO
ATPase of HSP70 class
Predicted ATPase of HSP70 class {ECO:0000313|EMBL:AAK79133.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L3_068_000M1_scaffold_1891_2
unknown

Not on your lists

363..653
DNA (291bp) protein (97aa)

This feature has no annotations

L3_068_000M1_scaffold_1891_3
unknown

Not on your lists

756..968
DNA (213bp) protein (71aa)

This feature has no annotations

L3_068_000M1_scaffold_1891_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1004..1879
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1QVP9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP54284.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
hypothetical protein
L3_068_000M1_scaffold_1891_5
unknown

Not on your lists

1869..2045
DNA (177bp) protein (59aa)

This feature has no annotations

L3_068_000M1_scaffold_1891_6
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2035..2604
DNA (570bp) protein (190aa)
Exonuclease RNase T and DNA polymerase III n=1 Tax=Clostridium sp. CAG:221 RepID=R6FSJ4_9CLOT
Exonuclease RNase T and DNA polymerase III {ECO:0000313|EMBL:CDB16168.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_068_000M1_scaffold_1891_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2621..2941
DNA (321bp) protein (107aa)
Putative regulatory protein n=1 Tax=Clostridium difficile E15 RepID=U3Y5M9_CLODI
regulatory protein
Putative regulatory protein {ECO:0000313|EMBL:CCL32484.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_068_000M1_scaffold_1891_8
unknown

Not on your lists

3023..3280
DNA (258bp) protein (86aa)

This feature has no annotations

L3_068_000M1_scaffold_1891_9
unknown

Not on your lists

3319..3486
DNA (168bp) protein (56aa)

This feature has no annotations

L3_068_000M1_scaffold_1891_10
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3531..3833
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FAN8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02113.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_068_000M1_scaffold_1891_11
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4010..4369
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum BC1 RepID=R4JYL7_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK95393.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_068_000M1_scaffold_1891_12
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4411..4638
DNA (228bp) protein (76aa)
Conserved domain protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V2B1_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD66802.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L3_068_000M1_scaffold_1891_13
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4635..5195
DNA (561bp) protein (187aa)
Integrase family protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JNB9_CELLD
integrase
Integrase family protein {ECO:0000313|EMBL:ADZ83573.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_068_000M1_scaffold_1891_14
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5380..5694
DNA (315bp) protein (105aa)
HNH endonuclease family protein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T0E907_CLOSO
Gp54 protein {ECO:0000313|EMBL:CEQ19671.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Gp54 protein
L3_068_000M1_scaffold_1891_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5857..6357
DNA (501bp) protein (167aa)
Terminase small subunit n=1 Tax=Clostridium botulinum (strain 657 / Type Ba4) RepID=C3KUF0_CLOB6
RNA polymerase sigma 70 {ECO:0000313|EMBL:KIL06868.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
terminase small subunit
L3_068_000M1_scaffold_1891_16
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6338..7981
DNA (1644bp) protein (548aa)
Putative phage terminase, large subunit n=1 Tax=Clostridium botulinum (strain 657 / Type Ba4) RepID=C3KUF1_CLOB6
putative phage terminase large subunit
Putative phage terminase large subunit {ECO:0000313|EMBL:CEP65154.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L3_068_000M1_scaffold_1891_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8291..9163
DNA (873bp) protein (291aa)
Phage portal protein, HK97 family n=1 Tax=Clostridium botulinum (strain 657 / Type Ba4) RepID=C3KUF2_CLOB6
phage portal protein, HK97 family
Portal protein {ECO:0000313|EMBL:KJU72476.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_068_000M1_scaffold_1891_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9132..9743
DNA (612bp) protein (204aa)
Phage prohead protease, HK97 family n=1 Tax=Clostridium difficile CD113 RepID=T4Y9R2_CLODI
Peptidase U35 {ECO:0000313|EMBL:KJU72475.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
prohead protease
L3_068_000M1_scaffold_1891_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9743..10891
DNA (1149bp) protein (383aa)
Phage major capsid protein, HK97 family n=3 Tax=Clostridium difficile RepID=T4B9X7_CLODI
Major capsid protein {ECO:0000313|EMBL:KJU72474.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
mAjor capsid protein a
L3_068_000M1_scaffold_1891_20
Clostridium phage phiCD6356, Caudovirales, Viruses

Not on your lists

10907..11206
DNA (300bp) protein (100aa)
Uncharacterized protein n=4 Tax=root RepID=T2TQX6_CLODI
Putative uncharacterized protein {ECO:0000313|EMBL:ADK37868.1}; TaxID=864178 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Clostridium phage phiCD6356.;"
Gp6 protein
L3_068_000M1_scaffold_1891_21
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11187..11549
DNA (363bp) protein (121aa)
Phage head-tail adaptor, putative n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5USH9_CLOBO
Phage head-tail adaptor {ECO:0000313|EMBL:CEP42993.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
phage head-tail adaptor
L3_068_000M1_scaffold_1891_22
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11549..11989
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XLB7_CLOPE
HK97 family phage protein {ECO:0000313|EMBL:CEP42617.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L3_068_000M1_scaffold_1891_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11991..12320
DNA (330bp) protein (110aa)
Gp10 protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UX96_CLOBO
Gp10 protein {ECO:0000313|EMBL:EES50435.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Gp10 protein
L3_068_000M1_scaffold_1891_24
Geobacillus kaustophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12321..12908
DNA (588bp) protein (196aa)
Phage major tail protein, phi13 family n=1 Tax=Anoxybacillus sp. SK3-4 RepID=T0BAJ2_9BACI
Phage major tail, phi13 family protein {ECO:0000313|EMBL:KJE27245.1}; TaxID=1462 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus kaustophilus.;"
L3_068_000M1_scaffold_1891_25
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12923..13300
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DG52_CLOTH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYE87496.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
L3_068_000M1_scaffold_1891_26
Clostridium phage phiCD6356, Caudovirales, Viruses

Not on your lists

13477..16881
DNA (3405bp) protein (1135aa)
Phage tail tape measure protein, TP901 family, core region n=3 Tax=Clostridium difficile RepID=T3IYC6_CLODI
Putative phage tail tape measure protein {ECO:0000313|EMBL:ADK37877.1}; TaxID=864178 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Clostridium phage phiCD6356.;"
TP901 family phage tail tape measure protein
L3_068_000M1_scaffold_1891_27
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16874..17581
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MTX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS74535.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
phage putative tail component, N-terminal domain
L3_068_000M1_scaffold_1891_28
Clostridium phage PhiS63, Caudovirales, Viruses

Not on your lists

17584..19518
DNA (1935bp) protein (645aa)
Gp15 n=1 Tax=Clostridium phage PhiS63 RepID=I2E8W3_9CAUD
Gp15 {ECO:0000313|EMBL:AFJ96073.1}; TaxID=1187894 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Clostridium phage PhiS63.;"
phage structural protein
L3_068_000M1_scaffold_1891_29
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19536..20291
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SVZ5_CLOC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL53206.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
Displaying 29 items

View Taxonomy