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L3_068_000M1_scaffold_947

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_947_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(532..939)
DNA (408bp) protein (136aa)
Putative RNA-binding protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U3U9_9CLOT
RNA binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:EKQ55971.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_068_000M1_scaffold_947_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(990..1364)
DNA (375bp) protein (125aa)
Uncharacterized protein n=3 Tax=Clostridium perfringens RepID=H7CZI0_CLOPF
septum formation initiator family protein
Septum formation initiator family protein {ECO:0000313|EMBL:AIY84161.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_068_000M1_scaffold_947_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1441..1833)
DNA (393bp) protein (131aa)
Spore cortex biosynthesis protein YabQ n=3 Tax=Clostridium butyricum RepID=B1R1T2_CLOBU
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:KHD15184.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
yabQ; spore cortex biosynthesis protein YabQ
L3_068_000M1_scaffold_947_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1835..2107)
DNA (273bp) protein (91aa)
Sporulation protein YabP n=2 Tax=Clostridium botulinum E RepID=B2UXT7_CLOBA
yabP; sporulation protein YabP
Uncharacterized protein {ECO:0000313|EMBL:KIL08476.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L3_068_000M1_scaffold_947_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2172..2432)
DNA (261bp) protein (87aa)
S4 domain protein n=2 Tax=Clostridium botulinum E RepID=B2UXT6_CLOBA
S4 domain-containing protein
S4 domain protein {ECO:0000313|EMBL:EES51221.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_068_000M1_scaffold_947_6
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2495..2770)
DNA (276bp) protein (92aa)
Histone family protein DNA-binding protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CB97_9CLOT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:EOR26649.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
histone family protein DNA-binding protein
L3_068_000M1_scaffold_947_7
unknown

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comp(2846..2950)
DNA (105bp) protein (35aa)

This feature has no annotations

L3_068_000M1_scaffold_947_8
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2978..4429)
DNA (1452bp) protein (484aa)
MazG family protein n=2 Tax=Clostridium botulinum B RepID=B2TI15_CLOBB
MazG family protein
MazG family protein {ECO:0000313|EMBL:ACD23035.1}; Putative tetrapyrrole (Corrin/Porphyrin) methylase and nucleoside triphosphate pyrophosphohydrolase fusion protein {ECO:0000313|EMBL:CDH89135.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_068_000M1_scaffold_947_9
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4449..5987)
DNA (1539bp) protein (513aa)
Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6T818_9CLOT
Membrane protein involved in the export of O-antigen and teichoic acid {ECO:0000313|EMBL:EKQ55978.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
spoVB1; stage V sporulation protein B
L3_068_000M1_scaffold_947_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6063..6605)
DNA (543bp) protein (181aa)
Stage V sporulation protein T n=2 Tax=Clostridium botulinum B RepID=B2TI13_CLOBB
spoVT; stage V sporulation protein T
Stage V sporulation protein T {ECO:0000313|EMBL:AIY82768.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_068_000M1_scaffold_947_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6766..7797)
DNA (1032bp) protein (344aa)
prsA1; foldase protein PrsA (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Foldase protein PrsA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKP9_CLOSA
L3_068_000M1_scaffold_947_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8012..11515)
DNA (3504bp) protein (1168aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Transcription-repair-coupling factor n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MK40_CLOSA
mfd; transcription-repair coupling factor
L3_068_000M1_scaffold_947_13
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11533..12102)
DNA (570bp) protein (190aa)
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Peptidyl-tRNA hydrolase Pth n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKX4_CLOSA
L3_068_000M1_scaffold_947_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12179..12862)
DNA (684bp) protein (228aa)
DNA-binding response regulator n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KTE5_CLOBM
DNA-binding response regulator
DNA-binding response regulator {ECO:0000313|EMBL:ACA55592.1}; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Loch Maree / Type A3).;"
L3_068_000M1_scaffold_947_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12952..13911)
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
prs; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TTV1_9CLOT
L3_068_000M1_scaffold_947_16
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13966..15336)
DNA (1371bp) protein (457aa)
glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Clostridium colicanis 209318 RepID=N9XXN1_9CLOT
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
L3_068_000M1_scaffold_947_17
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15506..15790)
DNA (285bp) protein (95aa)
Putative septation protein SpoVG n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K7X5_CLOPA
uncharacterized protein, involved in the regulation of septum location
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_068_000M1_scaffold_947_18
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15901..16722)
DNA (822bp) protein (274aa)
Purine operon repressor, PurR n=2 Tax=Clostridium RepID=A6LPI9_CLOB8
pur operon repressor
Purine operon repressor, PurR {ECO:0000313|EMBL:ABR32269.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_068_000M1_scaffold_947_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16875..18293
DNA (1419bp) protein (473aa)
murC; UDP-N-acetylmuramate--alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium colicanis 209318 RepID=N9XWS1_9CLOT
L3_068_000M1_scaffold_947_20
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18455..19273
DNA (819bp) protein (273aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
purine nucleoside phosphorylase I (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PV07_9CLOT
L3_068_000M1_scaffold_947_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19340..20278)
DNA (939bp) protein (313aa)
Malonate transporter n=2 Tax=Clostridium butyricum RepID=M8K1B8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87260.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
malate transporter
L3_068_000M1_scaffold_947_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20441..21139
DNA (699bp) protein (233aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
Ser/Thr protein phosphatase family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXS1_CLOBA
Ser/Thr protein phosphatase family protein
L3_068_000M1_scaffold_947_23
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21305..22699
DNA (1395bp) protein (465aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
asnS; asparagine--tRNA ligase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KKR0_9CLOT
L3_068_000M1_scaffold_947_24
unknown

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comp(22754..23005)
DNA (252bp) protein (84aa)

This feature has no annotations

L3_068_000M1_scaffold_947_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23361..24833)
DNA (1473bp) protein (491aa)
TrkA C-terminal domain protein n=13 Tax=Clostridium difficile RepID=D5Q9V3_CLODI
Na(+)/H(+) antiporter {ECO:0000313|EMBL:CCK88964.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Na(+)/H(+) antiporter
L3_068_000M1_scaffold_947_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25022..25531)
DNA (510bp) protein (170aa)
anaerobic ribonucleoside-triphosphate reductase-activating protein (EC:1.97.1.-)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNZ6_CLOSA
L3_068_000M1_scaffold_947_27
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25656..26975)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRY9_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43559.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_068_000M1_scaffold_947_28
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27161..29449)
DNA (2289bp) protein (763aa)
Aconitase A (EC:4.2.1.3)
Aconitate hydratase domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VDW8_9FIRM
Aconitate hydratase domain protein {ECO:0000313|EMBL:CDC95315.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
L3_068_000M1_scaffold_947_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29675..31786)
DNA (2112bp) protein (704aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:ACD24894.1}; EC=1.17.4.2 {ECO:0000313|EMBL:ACD24894.1};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
nrdD; anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
ribonucleoside triphosphate reductase n=1 Tax=Clostridium botulinum RepID=UPI0002E3E31D
L3_068_000M1_scaffold_947_30
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32081..32923
DNA (843bp) protein (281aa)
DegV family protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CAX9_9CLOT
DegV family protein {ECO:0000313|EMBL:EOR26534.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
EDD, DegV family domain protein
Displaying items 1-30 of 35 in total

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