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L3_068_000M1_scaffold_1656

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1656_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(244..1608)
DNA (1365bp) protein (455aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
tRNA modification GTPase MnmE n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K3G5_9FIRM
tRNA modification GTPase TrmE
L3_068_000M1_scaffold_1656_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2575..3618)
DNA (1044bp) protein (348aa)
R3H domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KUU1_9FIRM
R3H domain protein {ECO:0000313|EMBL:ERJ96032.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted RNA-binding protein
L3_068_000M1_scaffold_1656_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3694..4848)
DNA (1155bp) protein (385aa)
Membrane protein insertase, YidC/Oxa1 family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KC08_9FIRM
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:ERJ96031.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
YidC/Oxa1 family membrane protein insertase
L3_068_000M1_scaffold_1656_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4857..5132)
DNA (276bp) protein (92aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KVF3_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1656_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5129..5497)
DNA (369bp) protein (123aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ribonuclease P protein component, eubacterial (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2R5_9FIRM
L3_068_000M1_scaffold_1656_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5977..6513)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KUS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96027.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1656_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6516..7649
DNA (1134bp) protein (378aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KBZ2_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
chromosomal replication initiator protein DnaA
L3_068_000M1_scaffold_1656_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7621..7911
DNA (291bp) protein (97aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KBZ2_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
chromosomal replication initiator protein DnaA
L3_068_000M1_scaffold_1656_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8083..8622)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2Q2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96024.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1656_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8649..9755
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00018259};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III, beta subunit n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M9Q1_9FIRM
L3_068_000M1_scaffold_1656_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10593..10826
DNA (234bp) protein (78aa)
S4 domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KUF2_9FIRM
S4 domain protein {ECO:0000313|EMBL:ERJ95705.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1656_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10823..11974
DNA (1152bp) protein (384aa)
DNA replication and repair protein RecF n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KB19_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
recF protein
L3_068_000M1_scaffold_1656_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12144..14090
DNA (1947bp) protein (649aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M8R4_9FIRM
L3_068_000M1_scaffold_1656_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14103..14636
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M1T8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ95709.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1656_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14875..17541
DNA (2667bp) protein (889aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KUF5_9FIRM
L3_068_000M1_scaffold_1656_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17699..18544
DNA (846bp) protein (282aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KTU4_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:ERJ95712.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted phosphohydrolases
L3_068_000M1_scaffold_1656_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18520..18969)
DNA (450bp) protein (150aa)
Putative stage V sporulation protein AC (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M8R7_9FIRM
Putative stage V sporulation protein AC {ECO:0000313|EMBL:ERJ95713.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
stage V sporulation protein AC
L3_068_000M1_scaffold_1656_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20045..21079
DNA (1035bp) protein (345aa)
Stage V sporulation protein AD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LB74_9FIRM
Stage V sporulation protein AD {ECO:0000313|EMBL:ERJ86734.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
stage V sporulation protein AD
L3_068_000M1_scaffold_1656_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21262..21621
DNA (360bp) protein (120aa)
Stage V sporulation protein AE n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K389_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:ERJ86732.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
stage V sporulation protein AE
L3_068_000M1_scaffold_1656_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22660..23421)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MCE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96968.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1656_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23762..24472
DNA (711bp) protein (237aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEL1_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERJ96966.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1656_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24568..25782)
DNA (1215bp) protein (405aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Phosphofructokinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5F0_9FIRM
pfkA3; Putative 6-phosphofructokinase
L3_068_000M1_scaffold_1656_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26304..26936
DNA (633bp) protein (211aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87608.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1656_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26939..28435)
DNA (1497bp) protein (499aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96969.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L-fucose isomerase and related proteins
L3_068_000M1_scaffold_1656_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28719..29036)
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXF7_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
thioredoxin
L3_068_000M1_scaffold_1656_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29104..29721)
DNA (618bp) protein (206aa)
Putative maltose O-acetyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEL7_9FIRM
Putative maltose O-acetyltransferase {ECO:0000313|EMBL:ERJ96971.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
Displaying 26 items

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