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L3_068_000M1_scaffold_1884

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Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1884_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(199..432)
DNA (234bp) protein (78aa)
UPF0109 protein RUMCAL_02012 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5N5_9FIRM
UPF0109 protein RUMCAL_02012 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1884_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(577..819)
DNA (243bp) protein (81aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KRD1_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S16P
L3_068_000M1_scaffold_1884_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(890..2305)
DNA (1416bp) protein (472aa)
Signal recognition particle protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K811_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
signal recognition particle subunit FFH/SRP54 (srp54)
L3_068_000M1_scaffold_1884_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2331..2690)
DNA (360bp) protein (120aa)
Helix-turn-helix protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQT1_9FIRM
UPF0122 protein RUMCAL_02016 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1884_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2985..3623
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94633.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1884_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3748..4164
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LYR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94634.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1884_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4315..5820)
DNA (1506bp) protein (502aa)
Transporter n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQR6_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
putative transporter
L3_068_000M1_scaffold_1884_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6028..7383)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LYP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94614.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1884_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7361..7732)
DNA (372bp) protein (124aa)
Sigma-70 region 2 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KRC1_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:ERJ94615.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_068_000M1_scaffold_1884_10
unknown

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7876..8373
DNA (498bp) protein (166aa)

This feature has no annotations

L3_068_000M1_scaffold_1884_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8253..9755)
DNA (1503bp) protein (501aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQS1_9FIRM
Signal transduction histidine kinase
L3_068_000M1_scaffold_1884_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9715..10425)
DNA (711bp) protein (237aa)
Putative transcriptional regulatory protein ResD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5M8_9FIRM
Putative transcriptional regulatory protein ResD {ECO:0000313|EMBL:ERJ94618.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_068_000M1_scaffold_1884_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10506..12110)
DNA (1605bp) protein (535aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LYQ4_9FIRM
L3_068_000M1_scaffold_1884_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12659..13828
DNA (1170bp) protein (390aa)
Metallo-beta-lactamase domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQQ6_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:ERJ94602.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1884_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13969..14208)
DNA (240bp) protein (80aa)
FeoA domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5L7_9FIRM
FeoA domain protein {ECO:0000313|EMBL:ERJ94603.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Fe2+ transport system protein A
L3_068_000M1_scaffold_1884_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14255..15394)
DNA (1140bp) protein (380aa)
Glycosyltransferase, group 1 family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LYP1_9FIRM
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:ERJ94604.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Glycosyltransferase
L3_068_000M1_scaffold_1884_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16199..18499
DNA (2301bp) protein (767aa)
Glycosyl hydrolase family 3 protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQR2_9FIRM
Glycosyl hydrolase family 3 protein {ECO:0000313|EMBL:ERJ94607.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
glycosyl hydrolase family 3
L3_068_000M1_scaffold_1884_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18515..19315)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LYP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94609.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1884_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19435..20271
DNA (837bp) protein (279aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KRB7_9FIRM
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:ERJ94610.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_068_000M1_scaffold_1884_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20544..23000)
DNA (2457bp) protein (819aa)
Glycosyltransferase family 36 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEK0_9FIRM
Glycosyltransferase family 36 {ECO:0000313|EMBL:ERJ96956.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Glycoside Hydrolase Family 94 protein
L3_068_000M1_scaffold_1884_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23521..24018)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97017.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1884_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24293..25096)
DNA (804bp) protein (268aa)
Sortase, SrtB family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KY39_9FIRM
Sortase, SrtB family {ECO:0000313|EMBL:ERJ97015.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_068_000M1_scaffold_1884_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25232..25807)
DNA (576bp) protein (192aa)
Putative manganese efflux pump MntP n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5K2_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L3_068_000M1_scaffold_1884_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26019..30236)
DNA (4218bp) protein (1406aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4R7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96739.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
carbohydrate binding family 6
L3_068_000M1_scaffold_1884_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30369..31328)
DNA (960bp) protein (320aa)
Cohesin domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDY5_9FIRM
Cohesin domain protein {ECO:0000313|EMBL:ERJ96736.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Cohesin domain.
L3_068_000M1_scaffold_1884_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32370..32711)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5N9_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
50S ribosomal protein L17
L3_068_000M1_scaffold_1884_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32810..33763)
DNA (954bp) protein (318aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KY75_9FIRM
L3_068_000M1_scaffold_1884_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(33921..34517)
DNA (597bp) protein (199aa)
30S ribosomal protein S4 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEW4_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S4P
L3_068_000M1_scaffold_1884_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34545..34946)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=2 Tax=Ruminococcus RepID=R7FFX5_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S11P
L3_068_000M1_scaffold_1884_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34963..35331)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MCN7_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S13P
Displaying items 1-30 of 58 in total

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