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L3_068_000M1_scaffold_2015

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_2015_1
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

254..1669
DNA (1416bp) protein (472aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7U7_9SPIR
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
dnaA; chromosome replication initiator DnaA
L3_068_000M1_scaffold_2015_2
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

1671..2288
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H397_9SPIR
Holliday junction DNA helicase subunit RuvA
L3_068_000M1_scaffold_2015_3
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

2436..2984
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HHG6_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24176.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_2015_4
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(3032..4018)
DNA (987bp) protein (329aa)
Type 4 prepilin peptidase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HH92_9SPIR
Type 4 prepilin peptidase {ECO:0000313|EMBL:CCY24177.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
peptidase A24A domain-containing protein
L3_068_000M1_scaffold_2015_5
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(4027..4806)
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3W5_9SPIR
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L3_068_000M1_scaffold_2015_6
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

4994..5275
DNA (282bp) protein (94aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7V3_9SPIR
L3_068_000M1_scaffold_2015_7
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

5349..6953
DNA (1605bp) protein (535aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
CTP synthase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H399_9SPIR
CTP synthetase
L3_068_000M1_scaffold_2015_8
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(7006..7236)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3W8_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24183.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_2015_9
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

7344..8021
DNA (678bp) protein (226aa)
transmembrane_regions 12..34 id=161426 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
LspG (Type II protein secretion LspG pseudopilin) {ECO:0000313|EMBL:CCY63897.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_068_000M1_scaffold_2015_10
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

8107..9492
DNA (1386bp) protein (462aa)
Major facilitator superfamily (MFS) transporter n=1 Tax=Clostridium sp. CAG:729 RepID=R7LHV3_9CLOT
Major facilitator superfamily (MFS) transporter {ECO:0000313|EMBL:CDE88235.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
major facilitator superfamily protein
L3_068_000M1_scaffold_2015_11
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

9497..10900
DNA (1404bp) protein (468aa)
Short-chain dehydrogenase/reductase SDR family protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HH98_9SPIR
Short-chain dehydrogenase/reductase SDR family protein {ECO:0000313|EMBL:CCY24182.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
short-chain dehydrogenase/reductase SDR family protein
L3_068_000M1_scaffold_2015_12
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(10967..11650)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7V6_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24184.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_2015_13
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(11791..12459)
DNA (669bp) protein (223aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Thymidylate kinase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HHH5_9SPIR
thymidylate kinase
L3_068_000M1_scaffold_2015_14
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(12461..13135)
DNA (675bp) protein (225aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
tmk; putative thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HHA2_9SPIR
L3_068_000M1_scaffold_2015_15
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(13146..13985)
DNA (840bp) protein (280aa)
Metal dependent phosphohydrolase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3X2_9SPIR
Metal dependent phosphohydrolase {ECO:0000313|EMBL:CCY24188.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
HAD-superfamily hydrolase
L3_068_000M1_scaffold_2015_16
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(13988..15058)
DNA (1071bp) protein (357aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7W1_9SPIR
L3_068_000M1_scaffold_2015_17
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(15166..15387)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3A8_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24190.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_068_000M1_scaffold_2015_18
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

15506..16195
DNA (690bp) protein (230aa)
Putative general secretion pathway protein G (EpsG-like) n=1 Tax=Clostridium sp. CAG:967 RepID=R5KSD9_9CLOT
Putative general secretion pathway protein G (EpsG-like) {ECO:0000313|EMBL:CCY63862.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_068_000M1_scaffold_2015_19
unknown

Not on your lists

16205..16327
DNA (123bp) protein (41aa)

This feature has no annotations

L3_068_000M1_scaffold_2015_20
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

16296..16451
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HHB1_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24197.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_2015_21
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

Not on your lists

comp(16501..18168)
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q3D0_9DELT id=162781 bin=MEL_C1 species=Desulfovibrio sp. U5L genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=MEL_C1 organism_group=Melainabacteria
4-amino-4-deoxy-L-arabinose transferase-related glycosyltransferase of PMT family
Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
L3_068_000M1_scaffold_2015_22
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

comp(18222..19211)
DNA (990bp) protein (330aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Clostridium sp. CAG:715 RepID=R5DXH0_9CLOT
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:CCX80671.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:715.;"
theronine dehydrogenase-like Zn-dependent dehydrogenase
L3_068_000M1_scaffold_2015_23
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(19205..20167)
DNA (963bp) protein (321aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3X6_9SPIR
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:CCY24193.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_068_000M1_scaffold_2015_24
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

20245..21231
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7J7A9_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:CDE58747.1}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
L3_068_000M1_scaffold_2015_25
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists


comp(21296..21550)
DNA (255bp) protein (85aa)
50S ribosomal protein L27 n=1 Tax=Clostridium sp. CAG:729 RepID=R7LKP5_9CLOT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
50S ribosomal protein L25
L3_068_000M1_scaffold_2015_26
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists


comp(21714..22070)
DNA (357bp) protein (119aa)
50S ribosomal protein L21 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3B3_9SPIR
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
50S ribosomal protein L21P
L3_068_000M1_scaffold_2015_27
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

22248..23585
DNA (1338bp) protein (446aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HHJ0_9SPIR
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase
L3_068_000M1_scaffold_2015_28
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

23582..24562
DNA (981bp) protein (327aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HHB6_9SPIR
phospho-N-acetylmuramoyl-pentapeptide-transferase
L3_068_000M1_scaffold_2015_29
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

24564..25916
DNA (1353bp) protein (451aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H3Y5_9SPIR
L3_068_000M1_scaffold_2015_30
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

25897..27078
DNA (1182bp) protein (394aa)
Cell division-specific peptidoglycan biosynthesis regulator FtsW n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H7X2_9SPIR
Cell division-specific peptidoglycan biosynthesis regulator FtsW {ECO:0000313|EMBL:CCY24204.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
spore cortex peptidoglycan biosynthesis regulator SpoVE
Displaying items 1-30 of 45 in total

View Taxonomy