ggKbase home page

L3_068_000M1_scaffold_321

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_321_1
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(1..216)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:967 RepID=R5K739_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY62570.1}; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
L3_068_000M1_scaffold_321_2
GWF2_Melainabacteria_37_15_curated, Melainabacteria, Bacteria

Not on your lists

317..547
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. CAG:196 RepID=R5SGL1_9GAMM
hypothetical protein
Tax=GWF2_Melainabacteria_37_15_curated
L3_068_000M1_scaffold_321_3
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

630..2363
DNA (1734bp) protein (578aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Proline--tRNA ligase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HIG0_9SPIR
prolyl-tRNA synthetase
L3_068_000M1_scaffold_321_4
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(2390..3082)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HIM8_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24546.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_5
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

3209..3448
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HJX4_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25117.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_6
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

3481..4233
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7HVV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE42347.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L3_068_000M1_scaffold_321_7
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(4240..5235)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H2K6_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY23703.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
hypothetical protein
L3_068_000M1_scaffold_321_8
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

5277..6284
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HFU3_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY23702.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_9
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

6497..7783
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HG41_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY23701.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_10
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(7845..8477)
DNA (633bp) protein (211aa)
Phage SPO1 DNA polymerase-related protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H1Z2_9SPIR
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:CCY23700.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
phage SPO1 DNA polymerase-like protein
L3_068_000M1_scaffold_321_11
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(8437..9951)
DNA (1515bp) protein (505aa)
Amino acid carrier protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6H8_9SPIR
Amino acid carrier protein {ECO:0000313|EMBL:CCY23699.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
amino acid carrier protein
L3_068_000M1_scaffold_321_12
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(10102..11145)
DNA (1044bp) protein (348aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKL4_9SPIR
L3_068_000M1_scaffold_321_13
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(11148..12245)
DNA (1098bp) protein (366aa)
60 kDa inner membrane insertion protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6A0_9SPIR
60 kDa inner membrane insertion protein {ECO:0000313|EMBL:CCY25230.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
YidC/Oxa1 family membrane protein insertase
L3_068_000M1_scaffold_321_14
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

12717..13139
DNA (423bp) protein (141aa)
Thioesterase superfamily protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HK71_9SPIR
Thioesterase superfamily protein {ECO:0000313|EMBL:CCY25227.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
thioesterase superfamily protein
L3_068_000M1_scaffold_321_15
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

13121..13855
DNA (735bp) protein (245aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Pseudouridine synthase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKK8_9SPIR
pseudouridine synthase Rsu
L3_068_000M1_scaffold_321_16
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

13848..14411
DNA (564bp) protein (188aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Dephospho-CoA kinase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H696_9SPIR
dephospho-CoA kinase
L3_068_000M1_scaffold_321_17
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(14408..15229)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HAU1_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25224.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_18
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(15309..15638)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6V9_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25223.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_19
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(15641..17476)
DNA (1836bp) protein (612aa)
ABC transporter n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HK67_9SPIR
ABC transporter {ECO:0000313|EMBL:CCY25222.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
ABC transporter
L3_068_000M1_scaffold_321_20
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

17597..18895
DNA (1299bp) protein (433aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKK2_9SPIR
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:CCY25221.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_21
unknown

Not on your lists

19184..19333
DNA (150bp) protein (50aa)

This feature has no annotations

L3_068_000M1_scaffold_321_22
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

19306..19722
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:768 RepID=R7HTY2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE42438.1}; TaxID=1262838 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:768.;"
L3_068_000M1_scaffold_321_23
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(19727..20179)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6V4_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25218.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_24
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(20189..20368)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HK64_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY25217.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
L3_068_000M1_scaffold_321_25
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists


20513..20866
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HKJ5_9SPIR
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
rplS; ribosomal protein L19
L3_068_000M1_scaffold_321_26
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

20853..21710
DNA (858bp) protein (286aa)
Ribosome biogenesis GTPase A n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H688_9SPIR
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
ribosome biogenesis GTP-binding protein YlqF
L3_068_000M1_scaffold_321_27
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

21710..22405
DNA (696bp) protein (232aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Brachyspira sp. CAG:484 RepID=R5HAT2_9SPIR
L3_068_000M1_scaffold_321_28
unknown

Not on your lists

comp(22402..22839)
DNA (438bp) protein (146aa)

This feature has no annotations

L3_068_000M1_scaffold_321_29
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(22897..24339)
DNA (1443bp) protein (481aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Glycogen synthase n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H942_9SPIR
glycogen synthase
L3_068_000M1_scaffold_321_30
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(24339..27875)
DNA (3537bp) protein (1179aa)
Uncharacterized protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H4J1_9SPIR
Uncharacterized protein {ECO:0000313|EMBL:CCY24600.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira sp. CAG:484.;"
Displaying items 1-30 of 70 in total

View Taxonomy