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L3_068_000M1_scaffold_2389

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_2389_1
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1030)
DNA (1029bp) protein (343aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KY83_9FIRM
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:CDE81394.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Relaxase/mobilization nuclease domain protein
L3_068_000M1_scaffold_2389_2
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1032..1361)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2E8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81392.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Bacterial mobilisation protein (MobC).
L3_068_000M1_scaffold_2389_3
Paramecium tetraurelia, Paramecium, Peniculida, Oligohymenophorea, Eukaryota

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comp(1546..2277)
DNA (732bp) protein (244aa)
Chromosome undetermined scaffold_40, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D875_PARTE
Chromosome undetermined scaffold_40, whole genome shotgun sequence {ECO:0000313|EMBL:CAK79242.1}; TaxID=5888 species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium.;" source="Paramecium tetraurelia.;"
L3_068_000M1_scaffold_2389_4
unknown

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comp(2573..2926)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0002FD5952
L3_068_000M1_scaffold_2389_5
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2898..3839)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37C10
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97777.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_068_000M1_scaffold_2389_6
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3874..4071)
DNA (198bp) protein (66aa)
Prophage LambdaBa02 DNA-binding protein putative n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KM88_9FIRM
Prophage LambdaBa02 DNA-binding protein putative {ECO:0000313|EMBL:CDE77495.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_2389_7
unknown

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4295..5398
DNA (1104bp) protein (368aa)

This feature has no annotations

L3_068_000M1_scaffold_2389_8
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5433..7388
DNA (1956bp) protein (652aa)
Uncharacterized protein n=1 Tax=Bacillus cereus HuA3-9 RepID=R8DEK6_BACCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKA67213.1}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
L3_068_000M1_scaffold_2389_9
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7372..8352
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7D9L1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD86911.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L3_068_000M1_scaffold_2389_10
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(8433..10322)
DNA (1890bp) protein (630aa)
Uncharacterized protein n=2 Tax=Treponema denticola RepID=M2B8L8_TREDN
Uncharacterized protein {ECO:0000313|EMBL:EMB25760.1}; TaxID=999437 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola SP33.;"
ABC transporter ATP-binding protein
L3_068_000M1_scaffold_2389_11
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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comp(10356..12203)
DNA (1848bp) protein (616aa)
ABC transporter permease/ATP-binding protein HlyB family n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R6Q3_9FIRM
ABC transporter permease/ATP-binding protein HlyB family {ECO:0000313|EMBL:CCZ36288.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
ABC transporter
L3_068_000M1_scaffold_2389_12
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12292..13035)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KK79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30527.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_068_000M1_scaffold_2389_13
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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comp(13037..13558)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QDQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC28961.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
L3_068_000M1_scaffold_2389_14
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13564..14268)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JZX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS36777.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
LytTR family two component transcriptional regulator
L3_068_000M1_scaffold_2389_15
unknown

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14842..15126
DNA (285bp) protein (95aa)

This feature has no annotations

L3_068_000M1_scaffold_2389_16
unknown

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comp(15008..15787)
DNA (780bp) protein (260aa)

This feature has no annotations

L3_068_000M1_scaffold_2389_17
unknown

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comp(16061..16267)
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying 17 items

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