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L3_068_000M1_scaffold_1299

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1299_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15..584)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6BUX3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04635.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_068_000M1_scaffold_1299_2
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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738..1250
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2C4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82186.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1299_3
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1247..1942
DNA (696bp) protein (232aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0M0_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDE82185.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1299_4
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2031..4070
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0H9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82184.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1299_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4074..7271
DNA (3198bp) protein (1066aa)
Mismatch repair ATPase (MutS family) n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2G8_9FIRM
Mismatch repair ATPase (MutS family) {ECO:0000313|EMBL:CDE82183.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Mismatch repair ATPase (MutS family)
L3_068_000M1_scaffold_1299_6
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7569..8390
DNA (822bp) protein (274aa)
DNA repair protein radc n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4R8_9FIRM
DNA repair protein radc {ECO:0000313|EMBL:CDE82182.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
DNA repair protein radc
L3_068_000M1_scaffold_1299_7
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8437..11265
DNA (2829bp) protein (943aa)
UvrABC system protein A n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2B9_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
uvrA; UvrABC system protein A
L3_068_000M1_scaffold_1299_8
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11291..11959
DNA (669bp) protein (223aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Uracil-DNA glycosylase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0L6_9FIRM
uracil-DNA glycosylase
L3_068_000M1_scaffold_1299_9
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12148..12861
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0H3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82179.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Bacterial membrane flanked domain.
L3_068_000M1_scaffold_1299_10
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12858..14345
DNA (1488bp) protein (496aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2G3_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDE82178.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
putative membrane protein
L3_068_000M1_scaffold_1299_11
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14342..14593
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82177.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1299_12
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14648..15271)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82176.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1299_13
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15565..17910
DNA (2346bp) protein (782aa)
Stage II sporulation protein E (SpoIIE) n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0L3_9FIRM
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:CDE82175.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Stage II sporulation protein E (SpoIIE).
L3_068_000M1_scaffold_1299_14
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18070..20334
DNA (2265bp) protein (755aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
glycogen branching protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37B79
L3_068_000M1_scaffold_1299_15
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20397..21578
DNA (1182bp) protein (394aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
glgC; glucose-1-phosphate adenylyltransferase, GlgC subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4Q6_9FIRM
L3_068_000M1_scaffold_1299_16
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21608..22732
DNA (1125bp) protein (375aa)
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase GlgD subunit n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2A6_9FIRM
Glucose-1-phosphate adenylyltransferase GlgD subunit {ECO:0000313|EMBL:CDE82171.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1299_17
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22807..24228
DNA (1422bp) protein (474aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
glgA2; glycogen synthase (Glycosyltransferase Family 5 protein ) (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0K7_9FIRM
L3_068_000M1_scaffold_1299_18
unknown

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24250..24378
DNA (129bp) protein (43aa)

This feature has no annotations

L3_068_000M1_scaffold_1299_19
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24680..24985)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6CV17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA69187.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
hypothetical protein
L3_068_000M1_scaffold_1299_20
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25082..26689)
DNA (1608bp) protein (536aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L3C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82521.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1299_21
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27029..28033
DNA (1005bp) protein (335aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L1J9_9FIRM
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:CDE82520.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit
L3_068_000M1_scaffold_1299_22
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28548..31064
DNA (2517bp) protein (839aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L3B2_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDE82511.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain.
L3_068_000M1_scaffold_1299_23
unknown

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comp(31211..31336)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 23 items

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