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L3_068_000M1_scaffold_1892

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1892_1
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..91
DNA (90bp) protein (30aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KY57_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDE81359.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1892_2
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

144..617
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KZZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81361.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1892_3
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

687..1937
DNA (1251bp) protein (417aa)
Adenosylhomocysteinase {ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|RuleBase:RU000548};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ahcY; Adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L083_9FIRM
L3_068_000M1_scaffold_1892_4
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1953..2183
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KY95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81365.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1892_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2219..3385
DNA (1167bp) protein (389aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2C6_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDE81367.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L3_068_000M1_scaffold_1892_6
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3645..4406
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81402.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1892_7
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4513..5127
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81403.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1892_8
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5188..5727
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81403.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1892_9
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5740..6276
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KYD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81405.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1892_10
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6281..6460
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2G2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81407.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1892_11
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6573..7151
DNA (579bp) protein (193aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0C1_9FIRM
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
sfsA; Sugar fermentation stimulation protein homolog
L3_068_000M1_scaffold_1892_12
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7163..8029
DNA (867bp) protein (289aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KY96_9FIRM
L3_068_000M1_scaffold_1892_13
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8032..8625
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KYD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81410.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_1892_14
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8628..10010
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L047_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE81411.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
S-layer protein
L3_068_000M1_scaffold_1892_15
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10244..10963
DNA (720bp) protein (240aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2G6_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDE81412.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Capsular polysaccharide biosynthesis protein
L3_068_000M1_scaffold_1892_16
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10989..11930
DNA (942bp) protein (314aa)
Uridine kinase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0C6_9FIRM
Uridine kinase {ECO:0000313|EMBL:CDE81413.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Uridine kinase
L3_068_000M1_scaffold_1892_17
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12033..12875
DNA (843bp) protein (281aa)
Nucleotide-binding protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KYA0_9FIRM
Nucleotide-binding protein {ECO:0000313|EMBL:CDE81414.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ATPases involved in chromosome partitioning
L3_068_000M1_scaffold_1892_18
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13754..15199)
DNA (1446bp) protein (482aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
proS; Prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KWN8_9FIRM
L3_068_000M1_scaffold_1892_19
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15186..15569)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KUT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE80164.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_1892_20
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15718..16887)
DNA (1170bp) protein (390aa)
Cellobiose 2-epimerase {ECO:0000256|HAMAP-Rule:MF_00929}; Short=CE {ECO:0000256|HAMAP-Rule:MF_00929};; EC=5.1.3.11 {ECO:0000256|HAMAP-Rule:MF_00929};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Cellobiose 2-epimerase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KWI6_9FIRM
N-acylglucosamine 2-epimerase
L3_068_000M1_scaffold_1892_21
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17120..19858)
DNA (2739bp) protein (913aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KZ12_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
protein translocase subunit secA
Displaying 21 items

View Taxonomy