ggKbase home page

L3_068_000M1_scaffold_744

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_744_1
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(347..2041)
DNA (1695bp) protein (565aa)
DnaJ-like protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4F1_9FIRM
DnaJ-like protein {ECO:0000313|EMBL:CDE82848.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_744_2
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2073..2825)
DNA (753bp) protein (251aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2G0_9FIRM
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CDE82849.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_068_000M1_scaffold_744_3
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2827..4503)
DNA (1677bp) protein (559aa)
DnaK family protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2J8_9FIRM
DnaK family protein {ECO:0000313|EMBL:CDE82850.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
chaperone heat shock Hsp70 protein
L3_068_000M1_scaffold_744_4
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4685..6019
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HDI5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE37381.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
integral membrane protein
L3_068_000M1_scaffold_744_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6069..7028)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4E4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82866.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ABC transporter membrane component
L3_068_000M1_scaffold_744_6
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7030..8139)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L6L8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82867.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
ABC transporter membrane component
L3_068_000M1_scaffold_744_7
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8132..9658)
DNA (1527bp) protein (509aa)
Simple sugar transport system ATP-binding protein (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82868.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_744_8
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9799..10977)
DNA (1179bp) protein (393aa)
Membrane protein Bmp family n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2H5_9FIRM
Membrane protein Bmp family {ECO:0000313|EMBL:CDE82869.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
membrane protein, Bmp family
L3_068_000M1_scaffold_744_9
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11047..11622)
DNA (576bp) protein (192aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
xpt; xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2L2_9FIRM
L3_068_000M1_scaffold_744_10
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11963..12829
DNA (867bp) protein (289aa)
UPF0042 nucleotide-binding protein BN622_00616 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4E9_9FIRM
Nucleotide-binding protein BN622_00616 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Predicted P-loop-containing kinase
L3_068_000M1_scaffold_744_11
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12856..13788
DNA (933bp) protein (311aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L6M3_9FIRM
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
conserved hypothetical protein
L3_068_000M1_scaffold_744_12
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13805..14233
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4H3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82873.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_744_13
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14281..17703
DNA (3423bp) protein (1141aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III catalytic subunit DnaE type n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2I0_9FIRM
L3_068_000M1_scaffold_744_14
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17898..18863
DNA (966bp) protein (322aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
pfkA1; 6-phosphofructokinase (ATP) (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2L6_9FIRM
L3_068_000M1_scaffold_744_15
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19095..19721
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82876.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_744_16
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19737..20534
DNA (798bp) protein (266aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L6M5_9FIRM
L3_068_000M1_scaffold_744_17
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20612..21202
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4H7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82878.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_068_000M1_scaffold_744_18
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21281..22141
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2I4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82879.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_744_19
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22359..23237
DNA (879bp) protein (293aa)
TIGR00255 family protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2L9_9FIRM
TIGR00255 family protein {ECO:0000313|EMBL:CDE82880.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
conserved hypothetical protein
L3_068_000M1_scaffold_744_20
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23255..23512
DNA (258bp) protein (86aa)
UPF0296 protein BN622_00626 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4F8_9FIRM
UPF0296 protein BN622_00626 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L3_068_000M1_scaffold_744_21
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23551..24153
DNA (603bp) protein (201aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2I7_9FIRM
L3_068_000M1_scaffold_744_22
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24172..24402
DNA (231bp) protein (77aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4G2_9FIRM
DNA-directed RNA polymerase subunit omega
L3_068_000M1_scaffold_744_23
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24408..26828
DNA (2421bp) protein (807aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
priA; primosomal protein N' (EC:3.6.1.-)
Primosomal protein N n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L6N6_9FIRM
L3_068_000M1_scaffold_744_24
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26846..27364
DNA (519bp) protein (173aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4I6_9FIRM
L3_068_000M1_scaffold_744_25
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27388..28308
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Methionyl-tRNA formyltransferase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2J1_9FIRM
methionyl-tRNA formyltransferase
L3_068_000M1_scaffold_744_26
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28335..29021
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2M9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82890.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Predicted Zn-dependent protease
L3_068_000M1_scaffold_744_27
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29063..29731
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4G7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82891.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
neutral zinc metallopeptidase
L3_068_000M1_scaffold_744_28
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29756..31078
DNA (1323bp) protein (441aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L6P0_9FIRM
L3_068_000M1_scaffold_744_29
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31078..32106
DNA (1029bp) protein (343aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
rlmN; Ribosomal RNA large subunit methyltransferase N (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L4J0_9FIRM
L3_068_000M1_scaffold_744_30
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32161..32877
DNA (717bp) protein (239aa)
pppL; Putative phosphoprotein phosphatase (EC:3.1.3.16)
Serine/threonine protein phosphatase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2J4_9FIRM
Serine/threonine protein phosphatase {ECO:0000313|EMBL:CDE82894.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Displaying items 1-30 of 38 in total

View Taxonomy