ggKbase home page

L3_068_000M1_scaffold_373

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_373_1
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(569..910)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=2 Tax=environmental samples RepID=R5GI08_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
LSU ribosomal protein L17P
L3_068_000M1_scaffold_373_2
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(965..1924)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4Q8_9FIRM
L3_068_000M1_scaffold_373_3
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2143..2739)
DNA (597bp) protein (199aa)
30S ribosomal protein S4 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM27_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
SSU ribosomal protein S4P
L3_068_000M1_scaffold_373_4
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2836..3237)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4Y3_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
SSU ribosomal protein S11P
L3_068_000M1_scaffold_373_5
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3259..3627)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L9T1_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
SSU ribosomal protein S13P
L3_068_000M1_scaffold_373_6
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3663..3776)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4R3_9FIRM
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L36P
L3_068_000M1_scaffold_373_7
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3815..4033)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=2 Tax=environmental samples RepID=R5GVT1_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
translation initiation factor IF-1
L3_068_000M1_scaffold_373_8
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4035..4292)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LME0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY74167.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein predicted by Glimmer/Critica
L3_068_000M1_scaffold_373_9
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4297..5016)
DNA (720bp) protein (240aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4Y7_9FIRM
L3_068_000M1_scaffold_373_10
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5078..5710)
DNA (633bp) protein (211aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L9T4_9FIRM
L3_068_000M1_scaffold_373_11
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5789..7129)
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4R7_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
protein translocase subunit secY/sec61 alpha
L3_068_000M1_scaffold_373_12
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7129..7572)
DNA (444bp) protein (148aa)
50S ribosomal protein L15 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM36_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
50S ribosomal protein L15
L3_068_000M1_scaffold_373_13
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7658..7834)
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LME4_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L30P
L3_068_000M1_scaffold_373_14
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7857..8357)
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=2 Tax=environmental samples RepID=R5H6D6_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
SSU ribosomal protein S5P
L3_068_000M1_scaffold_373_15
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8375..8734)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L9T8_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L18P
L3_068_000M1_scaffold_373_16
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8762..9307)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4S1_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L6P
L3_068_000M1_scaffold_373_17
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9322..9720)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM42_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
SSU ribosomal protein S8P
L3_068_000M1_scaffold_373_18
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9889..10074)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=2 Tax=environmental samples RepID=R5H6E2_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
30S ribosomal protein S14
L3_068_000M1_scaffold_373_19
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10095..10634)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L9U3_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
Ribosomal protein L5
L3_068_000M1_scaffold_373_20
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10720..11040)
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM47_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L24P
L3_068_000M1_scaffold_373_21
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11057..11425)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=2 Tax=environmental samples RepID=R5GX42_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
LSU ribosomal protein L14P
L3_068_000M1_scaffold_373_22
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11449..11703)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM52_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
rpsQ; ribosomal protein S17
L3_068_000M1_scaffold_373_23
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11726..11926)
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L505_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L29P
L3_068_000M1_scaffold_373_24
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11926..12348)
DNA (423bp) protein (141aa)
50S ribosomal protein L16 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4T5_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L16P
L3_068_000M1_scaffold_373_25
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12348..13106)
DNA (759bp) protein (253aa)
30S ribosomal protein S3 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LMG3_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
SSU ribosomal protein S3P
L3_068_000M1_scaffold_373_26
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13121..13456)
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Eubacterium sp. CAG:786 RepID=R5GT30_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:786.;"
LSU ribosomal protein L22P
L3_068_000M1_scaffold_373_27
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13469..13747)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L4T8_9FIRM
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
30S ribosomal protein S19
L3_068_000M1_scaffold_373_28
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13929..14762)
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LMG8_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L2P
L3_068_000M1_scaffold_373_29
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14780..15076)
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM67_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L23P
L3_068_000M1_scaffold_373_30
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15076..15699)
DNA (624bp) protein (208aa)
50S ribosomal protein L4 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L9W6_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
LSU ribosomal protein L4P
Displaying items 1-30 of 73 in total

View Taxonomy