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L3_068_000M1_scaffold_1895

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1895_1
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(205..1416)
DNA (1212bp) protein (404aa)
Elongation factor Tu n=1 Tax=Thermincola potens (strain JR) RepID=D5X9U2_THEPJ
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
L3_068_000M1_scaffold_1895_2
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1438..3504)
DNA (2067bp) protein (689aa)
Elongation factor G n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUM7_CLOCD
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
translation elongation factor EF-G
L3_068_000M1_scaffold_1895_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3540..4010)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Clostridiales RepID=B0A6A5_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
30S ribosomal protein S7
L3_068_000M1_scaffold_1895_4
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4113..4466)
DNA (354bp) protein (118aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AG98_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
rpsL; 30S ribosomal protein S12
L3_068_000M1_scaffold_1895_5
Geobacillus sp. Y4.1MC1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4540..4782)
DNA (243bp) protein (81aa)
Putative ribosomal protein L7Ae-like n=3 Tax=Geobacillus RepID=E3I8W4_GEOS0
50S ribosomal protein L7Ae/L30e/S12e/Gadd45
Putative ribosomal protein L7Ae-like {ECO:0000256|HAMAP-Rule:MF_00574}; TaxID=581103 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. (strain Y4.1MC1).;"
L3_068_000M1_scaffold_1895_6
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4893..8471)
DNA (3579bp) protein (1193aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=Clostridium thermocellum RepID=RPOC_CLOTH
L3_068_000M1_scaffold_1895_7
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8500..12270)
DNA (3771bp) protein (1257aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VLF3_CLOSH
L3_068_000M1_scaffold_1895_8
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(12708..13727)
DNA (1020bp) protein (340aa)
Putative uncharacterized protein n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YD48_TREAZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF81295.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
L3_068_000M1_scaffold_1895_9
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13866..14396)
DNA (531bp) protein (177aa)
fumA; Fumarate hydratase subunit beta (EC:4.2.1.2)
Hydrolyase tartrate beta subunit/fumarate domain protein Fe-S type n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DYE5_9FIRM
Hydrolyase tartrate beta subunit/fumarate domain protein Fe-S type {ECO:0000313|EMBL:CDA89924.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
L3_068_000M1_scaffold_1895_10
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14406..15239)
DNA (834bp) protein (278aa)
hydro-lyase, Fe-S type, tartrate/fumarate subfamily (EC:4.2.1.2)
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily {ECO:0000313|EMBL:AEV69797.1}; EC=4.2.1.2 {ECO:0000313|EMBL:AEV69797.1};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
fumarate hydratase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2E7CA
L3_068_000M1_scaffold_1895_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15358..16173)
DNA (816bp) protein (272aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Clostridium RepID=A7VTI5_9CLOT
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EDO61481.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Small-conductance mechanosensitive channel
L3_068_000M1_scaffold_1895_12
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16187..17245)
DNA (1059bp) protein (353aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
tRNA threonylcarbamoyl adenosine modification protein Sua5/YciO/YrdC/YwlC family n=1 Tax=Eubacterium sp. CAG:202 RepID=R6NA99_9FIRM
translation factor SUA5
L3_068_000M1_scaffold_1895_13
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17718..17990)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2D9Q8_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI99564.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_068_000M1_scaffold_1895_14
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(18217..18909)
DNA (693bp) protein (231aa)
Amidophosphoribosyltransferase n=1 Tax=Caldanaerobacter subterraneus subsp. yonseiensis KB-1 RepID=U5CP61_THEYO
Amidophosphoribosyltransferase {ECO:0000313|EMBL:ERM91778.1}; TaxID=1388761 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. yonseiensis KB-1.;"
ComFC; amidophosphoribosyltransferase
L3_068_000M1_scaffold_1895_15
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18899..21130)
DNA (2232bp) protein (744aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
RecD/TraA family ATP-dependent DNA helicase (EC:3.1.11.5)
ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZWB1_MAHA5
L3_068_000M1_scaffold_1895_16
unknown

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comp(21132..22208)
DNA (1077bp) protein (359aa)

This feature has no annotations

L3_068_000M1_scaffold_1895_17
unknown

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comp(22231..23388)
DNA (1158bp) protein (386aa)

This feature has no annotations

L3_068_000M1_scaffold_1895_18
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(23416..24381)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LTG4_CLOCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIG24925.1}; TaxID=1042163 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus LMG 15441.;"
Displaying 18 items

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