ggKbase home page

L3_068_000M1_scaffold_1417

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1417_1
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..248
DNA (246bp) protein (82aa)
Ribosome-binding factor A n=1 Tax=Clostridium sp. CAG:306 RepID=R6QA48_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
ribosome-binding factor A
L3_068_000M1_scaffold_1417_2
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

255..1124
DNA (870bp) protein (290aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5M8_9CLOT
L3_068_000M1_scaffold_1417_3
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1121..1999
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P372_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18793.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_4
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2030..2644
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PK01_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18791.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
spore germination protein
L3_068_000M1_scaffold_1417_5
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2637..2906
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PDE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18789.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
Toxin-antitoxin system component HicB, antitoxin
L3_068_000M1_scaffold_1417_6
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2964..3896)
DNA (933bp) protein (311aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:306 RepID=R6QA38_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
rpoD; RNA polymerase sigma factor RpoD
L3_068_000M1_scaffold_1417_7
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4176..4601
DNA (426bp) protein (142aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
tRNA-adenosine deaminase (EC:3.5.4.-)
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PDE0_9CLOT
L3_068_000M1_scaffold_1417_8
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4598..5359
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6QA34_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18782.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hypothetical protein
L3_068_000M1_scaffold_1417_9
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5356..5982)
DNA (627bp) protein (209aa)
General secretion pathway protein G n=1 Tax=Clostridium sp. CAG:306 RepID=R6PDD7_9CLOT
General secretion pathway protein G {ECO:0000313|EMBL:CDC18779.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_10
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6018..7181)
DNA (1164bp) protein (388aa)
PEGA domain protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6QA30_9CLOT
PEGA domain protein {ECO:0000313|EMBL:CDC18777.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hypothetical protein
L3_068_000M1_scaffold_1417_11
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7232..7810)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5K9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18775.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_12
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7825..8502)
DNA (678bp) protein (226aa)
Peptidase M48 Ste24p n=1 Tax=Clostridium sp. CAG:306 RepID=R6P349_9CLOT
Peptidase M48 Ste24p {ECO:0000313|EMBL:CDC18773.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_13
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8573..9382)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PDC8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18769.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_14
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9379..10089)
DNA (711bp) protein (237aa)
Peptidase M48 Ste24p n=1 Tax=Clostridium sp. CAG:306 RepID=R6QA22_9CLOT
Peptidase M48 Ste24p {ECO:0000313|EMBL:CDC18767.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_15
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10147..10716)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6QA18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18762.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
lipoprotein
L3_068_000M1_scaffold_1417_16
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10731..11228)
DNA (498bp) protein (166aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:306 RepID=R6PB80_9CLOT
RNA polymerase sigma factor {ECO:0000313|EMBL:CDC17994.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
RNA polymerase sigma-E factor
L3_068_000M1_scaffold_1417_17
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11233..11589)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P3G3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC17995.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_18
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11935..12858
DNA (924bp) protein (308aa)
TPR Domain containing protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PHT3_9CLOT
TPR Domain containing protein {ECO:0000313|EMBL:CDC17996.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hypothetical protein
L3_068_000M1_scaffold_1417_19
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12830..13798)
DNA (969bp) protein (323aa)
Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Clostridium sp. CAG:306 RepID=R6Q7U7_9CLOT
Diguanylate cyclase and metal dependent phosphohydrolase {ECO:0000313|EMBL:CDC17997.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
putative domain HDIG-containing protein
L3_068_000M1_scaffold_1417_20
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(13915..15309)
DNA (1395bp) protein (465aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB id=162502 bin=MEL_C1 species=MEL_C1 genus=MEL_C1 taxon_order=MEL_C1 taxon_class=MEL_C1 phylum=Melainabacteria tax=MEL_C1 organism_group=Melainabacteria
Type II secretion system protein E {ECO:0000313|EMBL:CDE89456.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:729.;"
type ii secretion system protein e
L3_068_000M1_scaffold_1417_21
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15309..15680)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P107_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18028.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
phosphate regulon DNA-binding response regulator
L3_068_000M1_scaffold_1417_22
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15684..17792)
DNA (2109bp) protein (703aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Putative histidine kinase n=1 Tax=Clostridium sp. CAG:306 RepID=R6PBF2_9CLOT
Putative histidine kinase {ECO:0000313|EMBL:CDC18029.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_23
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17937..18551
DNA (615bp) protein (205aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
thymidine kinase (EC:2.7.1.21)
Thymidine kinase n=1 Tax=Clostridium sp. CAG:306 RepID=R6P3L8_9CLOT
L3_068_000M1_scaffold_1417_24
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18552..18803)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PHX1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18031.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_25
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18836..20062
DNA (1227bp) protein (409aa)
Three-deoxy-D-manno-octulosonic-acid transferase domain protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6Q7Y7_9CLOT
Three-deoxy-D-manno-octulosonic-acid transferase domain protein {ECO:0000313|EMBL:CDC18032.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
glycosyl transferase family protein
L3_068_000M1_scaffold_1417_26
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20135..22054
DNA (1920bp) protein (640aa)
Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Clostridium sp. CAG:306 RepID=R6P112_9CLOT
Diguanylate cyclase and metal dependent phosphohydrolase {ECO:0000313|EMBL:CDC18033.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
diguanylate cyclase and metal dependent phosphohydrolase
L3_068_000M1_scaffold_1417_27
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22029..22385
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PBF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18034.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_28
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22382..22636)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P3M3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18035.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_29
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22840..23043
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PHX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18036.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1417_30
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23040..25526)
DNA (2487bp) protein (829aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6Q7Z2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18037.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
Displaying items 1-30 of 31 in total

View Taxonomy