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L3_068_000M1_scaffold_1755

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1755_1
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

Not on your lists

2..178
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DZ33_9BACT
branched-chain amino acid aminotransferase
Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
L3_068_000M1_scaffold_1755_2
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

171..914
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P3G7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC18898.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hypothetical protein
L3_068_000M1_scaffold_1755_3
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

999..3605
DNA (2607bp) protein (869aa)
ATP-dependent chaperone ClpB n=1 Tax=Clostridium sp. CAG:306 RepID=R6PKC8_9CLOT
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
clpB; chaperone ClpB
L3_068_000M1_scaffold_1755_4
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3598..4221)
DNA (624bp) protein (208aa)
serB; phosphoserine phosphatase SerB (EC:3.1.3.3)
Phosphoserine phosphatase n=1 Tax=Clostridium sp. CAG:306 RepID=R6PAB8_9CLOT
Phosphoserine phosphatase {ECO:0000313|EMBL:CDC21258.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_5
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4241..4687)
DNA (447bp) protein (149aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Clostridium sp. CAG:306 RepID=R6PCK3_9CLOT
L3_068_000M1_scaffold_1755_6
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

5126..6376
DNA (1251bp) protein (417aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262849 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:967.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Clostridium sp. CAG:967 RepID=R5K616_9CLOT
L3_068_000M1_scaffold_1755_7
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6376..7419
DNA (1044bp) protein (348aa)
Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase n=1 Tax=Clostridium sp. CAG:306 RepID=R6QCC3_9CLOT
Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:CDC19512.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
glycosyl transferase family 4
L3_068_000M1_scaffold_1755_8
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7448..7690
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5C5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19513.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_9
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7687..8613)
DNA (927bp) protein (309aa)
Acetyl-CoA decarbonylase/synthase epsilon subunit n=1 Tax=Clostridium sp. CAG:306 RepID=R6PM90_9CLOT
Acetyl-CoA decarbonylase/synthase epsilon subunit {ECO:0000313|EMBL:CDC19516.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
dihydropteroate synthase
L3_068_000M1_scaffold_1755_10
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8613..9491)
DNA (879bp) protein (293aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Clostridium sp. CAG:306 RepID=R6PFI2_9CLOT
L3_068_000M1_scaffold_1755_11
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9501..10370)
DNA (870bp) protein (290aa)
Tyrosine recombinase XerC n=1 Tax=Clostridium sp. CAG:306 RepID=R6PM96_9CLOT
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
tyrosine recombinase XerD
L3_068_000M1_scaffold_1755_12
Fusobacterium sp. CAG:439, Melainabacteria, Bacteria

Not on your lists

comp(10403..12058)
DNA (1656bp) protein (552aa)
DNA repair protein RecN n=1 Tax=Fusobacterium sp. CAG:439 RepID=R7J920_9FUSO
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262899 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:439.;"
recN; DNA repair protein RecN
L3_068_000M1_scaffold_1755_13
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12060..12896)
DNA (837bp) protein (279aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Clostridium sp. CAG:306 RepID=R6PMA4_9CLOT
inorganic polyphosphate/ATP-NAD kinase
L3_068_000M1_scaffold_1755_14
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12946..13326)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6QCE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19537.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_15
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13819..14577)
DNA (759bp) protein (253aa)
Predicted phosphatase n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5E9_9CLOT
Predicted phosphatase {ECO:0000313|EMBL:CDC19538.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
phosphatase
L3_068_000M1_scaffold_1755_16
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14570..15541)
DNA (972bp) protein (324aa)
4Fe-4S ferredoxin iron-sulfur binding n=1 Tax=Clostridium sp. CAG:306 RepID=R6P7T5_9CLOT
4Fe-4S ferredoxin iron-sulfur binding {ECO:0000313|EMBL:CDC19540.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hycB; ferredoxin
L3_068_000M1_scaffold_1755_17
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15683..16006
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PMA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19541.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_18
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16000..16620)
DNA (621bp) protein (207aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Clostridium sp. CAG:306 RepID=R6QCE7_9CLOT
L3_068_000M1_scaffold_1755_19
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16632..17897)
DNA (1266bp) protein (422aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5F3_9CLOT
L3_068_000M1_scaffold_1755_20
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17985..18566
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PFJ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19544.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_21
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18659..19606
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P7U0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19545.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hypothetical protein
L3_068_000M1_scaffold_1755_22
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19599..20288
DNA (690bp) protein (230aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Clostridium sp. CAG:306 RepID=R6PMB2_9CLOT
ATPase ExsB
L3_068_000M1_scaffold_1755_23
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20311..20886
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6QCF0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19547.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hypothetical protein
L3_068_000M1_scaffold_1755_24
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20889..21569
DNA (681bp) protein (227aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5F7_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDC19548.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_25
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21703..22086
DNA (384bp) protein (128aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. CAG:306 RepID=R6PFK2_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
rpsL; 30S ribosomal protein S12
L3_068_000M1_scaffold_1755_26
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22114..22584
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Clostridium sp. CAG:306 RepID=R6P7U3_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
rpsG; 30S ribosomal protein S7 RpsG
L3_068_000M1_scaffold_1755_27
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22963..23598)
DNA (636bp) protein (212aa)
Phage protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PMB3_9CLOT
Phage protein {ECO:0000313|EMBL:CDC19551.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_28
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23680..24690
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6PFK8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19554.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
L3_068_000M1_scaffold_1755_29
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24697..25926)
DNA (1230bp) protein (410aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
hisS1; histidyl-tRNA synthetase HisS (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Clostridium sp. CAG:306 RepID=R6P7U7_9CLOT
L3_068_000M1_scaffold_1755_30
Clostridium sp. CAG:306, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26050..27087
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:306 RepID=R6P5G4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC19558.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:306.;"
permease
Displaying items 1-30 of 39 in total

View Taxonomy