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L3_068_000M1_scaffold_1207

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1207_1
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(37..786)
DNA (750bp) protein (250aa)
RNA polymerase sigma factor n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKU4_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
RNA polymerase, sigma subunit, RpsG/SigG
L3_068_000M1_scaffold_1207_2
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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983..1633
DNA (651bp) protein (217aa)
HAD-superfamily hydrolase subfamily IA variant 3 n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8F3_9CLOT
HAD-superfamily hydrolase subfamily IA variant 3 {ECO:0000313|EMBL:CDD03079.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L3_068_000M1_scaffold_1207_3
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1714..3504
DNA (1791bp) protein (597aa)
pepF2; oligoendopeptidase F (EC:3.4.24.-)
Oligoendopeptidase F n=1 Tax=Eubacterium sp. CAG:161 RepID=R5L059_9FIRM
Oligoendopeptidase F {ECO:0000313|EMBL:CCY70759.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
L3_068_000M1_scaffold_1207_4
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3519..4289
DNA (771bp) protein (257aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9LA81_BLAHA
nitroreductase
Uncharacterized protein {ECO:0000313|EMBL:EEX20879.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
L3_068_000M1_scaffold_1207_5
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4329..5585
DNA (1257bp) protein (419aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G576_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDR46926.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
L3_068_000M1_scaffold_1207_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5612..5854
DNA (243bp) protein (81aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KNY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25508.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Protein of unknown function (DUF3343).
L3_068_000M1_scaffold_1207_7
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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5866..7125
DNA (1260bp) protein (420aa)
Delta-lactam-biosynthetic de-N-acetylase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IKE0_9FIRM
Delta-lactam-biosynthetic de-N-acetylase {ECO:0000313|EMBL:EOS22414.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
polysaccharide deacetylase
L3_068_000M1_scaffold_1207_8
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7203..8597)
DNA (1395bp) protein (465aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
apeA; M18 family aminopeptidase 1 (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y587_9CLOT
L3_068_000M1_scaffold_1207_9
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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8801..10240
DNA (1440bp) protein (480aa)
Carboxyl transferase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W6L9_9CLOT
Carboxyl transferase {ECO:0000313|EMBL:ENY98544.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
carboxyl transferase
L3_068_000M1_scaffold_1207_10
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10320..11072
DNA (753bp) protein (251aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
Oxaloacetate decarboxylase gamma chain n=2 Tax=Clostridium RepID=D3ALL6_9CLOT
sodium pump decarboxylase subunit gamma
L3_068_000M1_scaffold_1207_11
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11105..11470
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6M109_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB89554.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
oxaloacetate decarboxylase
L3_068_000M1_scaffold_1207_12
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11534..12682
DNA (1149bp) protein (383aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase beta subunit n=1 Tax=Blautia sp. CAG:257 RepID=R5WW50_9FIRM
Sodium ion-translocating decarboxylase beta subunit {ECO:0000313|EMBL:CDA06805.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
L3_068_000M1_scaffold_1207_13
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12881..14308
DNA (1428bp) protein (476aa)
Oxaloacetate decarboxylase n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NRG4_9FIRM
Oxaloacetate decarboxylase {ECO:0000313|EMBL:CCZ04744.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
oxaloacetate decarboxylase
L3_068_000M1_scaffold_1207_14
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

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14473..15663
DNA (1191bp) protein (397aa)
Flavoprotein family protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BR26_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:CDA63429.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
NAD(FAD)-utilizing dehydrogenase
L3_068_000M1_scaffold_1207_15
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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15739..16404
DNA (666bp) protein (222aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Dorea longicatena CAG:42 RepID=R7G699_9FIRM
L3_068_000M1_scaffold_1207_16
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16404..17270
DNA (867bp) protein (289aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=Lachnospiraceae RepID=E9RS93_9FIRM
L3_068_000M1_scaffold_1207_17
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17239..18306
DNA (1068bp) protein (356aa)
Ribosomal protein S1 n=1 Tax=Clostridium sp. CAG:81 RepID=R5FXH2_9CLOT
Ribosomal protein S1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000313|EMBL:CDE47490.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
L3_068_000M1_scaffold_1207_18
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18392..19513)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ58240.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Predicted exonuclease
L3_068_000M1_scaffold_1207_19
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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19820..20323
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FLB0_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CCY05653.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
hypothetical protein
L3_068_000M1_scaffold_1207_20
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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20320..20910
DNA (591bp) protein (197aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
Signal peptidase I n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FY46_9ACTN
putative signal peptidase IB
L3_068_000M1_scaffold_1207_21
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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20930..26464
DNA (5535bp) protein (1845aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NVX3_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EEF92629.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
hypothetical protein
L3_068_000M1_scaffold_1207_22
Blautia hydrogenotrophica, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26592..28136
DNA (1545bp) protein (515aa)
Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CPU9_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEG48269.1}; TaxID=476272 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hydrogenotrophica DSM 10507.;"
hypothetical protein
L3_068_000M1_scaffold_1207_23
Eggerthella sp. CAG:1427, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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28459..29286
DNA (828bp) protein (276aa)
Sortase family protein n=1 Tax=Eggerthella sp. CAG:1427 RepID=R5FK24_9ACTN
Sortase family protein {ECO:0000313|EMBL:CCY05405.1}; TaxID=1262874 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella; environmental samples.;" source="Eggerthella sp. CAG:1427.;"
hypothetical protein
L3_068_000M1_scaffold_1207_24
unknown

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29310..29459
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 24 items

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