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L3_068_000M1_scaffold_1897

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_000M1_scaffold_1897_1
Eubacterium sp. CAG:192, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..3079)
DNA (3078bp) protein (1026aa)
SNF2 family N-terminal domain protein n=1 Tax=Eubacterium sp. CAG:192 RepID=R6FK11_9FIRM
SNF2 family N-terminal domain protein {ECO:0000313|EMBL:CDB13563.1}; TaxID=1262883 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:192.;"
Superfamily II DNA/RNA helicases, SNF2 family
L3_068_000M1_scaffold_1897_2
unknown

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comp(3076..3267)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_068_000M1_scaffold_1897_3
unknown

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comp(3298..4629)
DNA (1332bp) protein (444aa)

This feature has no annotations

L3_068_000M1_scaffold_1897_4
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4872..5792
DNA (921bp) protein (307aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
Homoserine O-succinyltransferase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YHV8_9FIRM
hypothetical protein
L3_068_000M1_scaffold_1897_5
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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comp(5834..7174)
DNA (1341bp) protein (447aa)
Putative efflux protein MATE family n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BHJ5_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDD64613.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
putative efflux protein, MATE family
L3_068_000M1_scaffold_1897_6
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7214..8347)
DNA (1134bp) protein (378aa)
Putative threonine-phosphate decarboxylase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSZ0_9FIRM
Putative threonine-phosphate decarboxylase {ECO:0000313|EMBL:EEG94219.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
L3_068_000M1_scaffold_1897_7
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

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comp(8351..9412)
DNA (1062bp) protein (354aa)
adenosylcobinamide-phosphate synthase (EC:6.3.1.10)
Cobalamin biosynthesis protein CobD n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7MZ06_9FIRM
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
L3_068_000M1_scaffold_1897_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9409..10062)
DNA (654bp) protein (218aa)
Fructose-2,6-bisphosphatase (EC:3.1.3.73)
Phosphoglycerate mutase family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AST4_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:CDA55053.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_000M1_scaffold_1897_9
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10035..10496)
DNA (462bp) protein (154aa)
Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase (EC:2.7.7.62 2.7.1.156)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NDT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF10287.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
L3_068_000M1_scaffold_1897_10
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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comp(10511..11281)
DNA (771bp) protein (257aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
Cobalamin-5-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EFX4_9FIRM
L3_068_000M1_scaffold_1897_11
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11296..11859)
DNA (564bp) protein (188aa)
Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FSZ5_9FIRM
Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase {ECO:0000313|EMBL:EEG94224.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
putative cobinamide kinase/cobinamide phosphate guanylyltransferase
L3_068_000M1_scaffold_1897_12
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11878..12945)
DNA (1068bp) protein (356aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|SAAS:SAAS00013344}; EC=2.4.2.21 {ECO:0000256|SAAS:SAAS00013328};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IZE4_9FIRM
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
L3_068_000M1_scaffold_1897_13
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12984..14507)
DNA (1524bp) protein (508aa)
Cobyric acid synthase n=1 Tax=Roseburia sp. CAG:197 RepID=R5ZAB1_9FIRM
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
cobyric acid synthase
L3_068_000M1_scaffold_1897_14
unknown

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comp(14725..14958)
DNA (234bp) protein (78aa)

This feature has no annotations

L3_068_000M1_scaffold_1897_15
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14970..16457)
DNA (1488bp) protein (496aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.14 1.4.1.13)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UMC8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC81381.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
L3_068_000M1_scaffold_1897_16
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16472..21031)
DNA (4560bp) protein (1520aa)
glutamate synthase (ferredoxin) (EC:1.4.7.1)
Uncharacterized protein n=2 Tax=Bacteria RepID=R7B4B4_9BACE
Putative uncharacterized protein {ECO:0000313|EMBL:EEC57480.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
L3_068_000M1_scaffold_1897_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21448..22086
DNA (639bp) protein (213aa)
Ribose/galactose isomerase n=2 Tax=Clostridium butyricum RepID=M8K7N9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD13314.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L3_068_000M1_scaffold_1897_18
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22431..25118)
DNA (2688bp) protein (896aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W418_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY97720.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_068_000M1_scaffold_1897_19
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25208..26068)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N9F7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98479.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
Displaying 19 items

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