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L3_068_243G1_scaffold_374

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_243G1_scaffold_374_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..786
DNA (786bp) protein (262aa)
Uncharacterized protein n=14 Tax=Bifidobacterium longum RepID=B3DSU8_BIFLD
Uncharacterized protein {ECO:0000313|EMBL:EEQ54832.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_068_243G1_scaffold_374_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

933..2393
DNA (1461bp) protein (487aa)
L-serine dehydratase n=9 Tax=Bifidobacterium longum RepID=Q8G5J3_BIFLO
L-serine dehydratase
L-serine deaminase {ECO:0000313|EMBL:ACD98216.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_243G1_scaffold_374_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2535..2942
DNA (408bp) protein (136aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Peptidyl-prolyl cis-trans isomerase n=16 Tax=Bifidobacterium RepID=B3DSU6_BIFLD
peptidyl-prolyl isomerase
L3_068_243G1_scaffold_374_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3041..3520
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=18 Tax=Bifidobacterium RepID=B3DSU5_BIFLD
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_243G1_scaffold_374_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3575..4519)
DNA (945bp) protein (315aa)
Predicted membrane protein, hemolysin III homolog n=12 Tax=Bifidobacterium RepID=D6D989_BIFLN
hypothetical protein
Hypothetical hemolysin III-like membrane protein {ECO:0000313|EMBL:ACD98213.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_243G1_scaffold_374_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4644..5417
DNA (774bp) protein (258aa)
Uncharacterized protein n=4 Tax=Bifidobacterium longum subsp. longum RepID=C2GUA6_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:EEI81033.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
hypothetical protein
L3_068_243G1_scaffold_374_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5580..7067
DNA (1488bp) protein (496aa)
Histidine kinase-like protein n=17 Tax=Bifidobacterium RepID=Q8G5J8_BIFLO
two-component sensor kinase
Histidine kinase {ECO:0000313|EMBL:KHD96073.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L3_068_243G1_scaffold_374_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7140..7418)
DNA (279bp) protein (93aa)
Transcriptional regulator WhiB1 n=23 Tax=Bifidobacterium RepID=WHIB1_BIFLO
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L3_068_243G1_scaffold_374_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7532..9358)
DNA (1827bp) protein (609aa)
DNA segregation ATPase n=11 Tax=Bifidobacterium RepID=B3DSU0_BIFLD
hypothetical protein
Cell division protein FtsK {ECO:0000313|EMBL:KEY21896.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_243G1_scaffold_374_10
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9528..10961)
DNA (1434bp) protein (478aa)
Transcriptional regulator n=6 Tax=Bifidobacterium RepID=B3DST9_BIFLD
lytR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CCY95601.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_068_243G1_scaffold_374_11
unknown

Not on your lists

comp(11090..11959)
DNA (870bp) protein (290aa)

This feature has no annotations

L3_068_243G1_scaffold_374_12
unknown

Not on your lists

comp(12406..12606)
DNA (201bp) protein (67aa)

This feature has no annotations

L3_068_243G1_scaffold_374_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12699..14582
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5E9Z9_BIFLI
membrane protein
Membrane protein {ECO:0000313|EMBL:AIW43575.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_068_243G1_scaffold_374_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14579..16120
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EA00_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ54844.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
hypothetical protein
L3_068_243G1_scaffold_374_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16223..16663)
DNA (441bp) protein (147aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G5K4_BIFLO
peptidase
Uncharacterized protein {ECO:0000313|EMBL:EEQ54845.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_068_243G1_scaffold_374_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16740..17546
DNA (807bp) protein (269aa)
Phosphomannomutase {ECO:0000313|EMBL:ESV33223.1}; EC=5.4.2.2 {ECO:0000313|EMBL:ESV33223.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
HAD-superfamily hydrolase, subfamily IIB n=7 Tax=Bifidobacterium RepID=D6D981_BIFLN
hypothetical protein
L3_068_243G1_scaffold_374_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17556..18278
DNA (723bp) protein (241aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=R5NEL8_9BIFI
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ66287.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_068_243G1_scaffold_374_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18194..18580)
DNA (387bp) protein (129aa)
Peptidase S24-like protein n=2 Tax=Bifidobacterium RepID=I3ARS7_BIFLN
Peptidase S24 {ECO:0000313|EMBL:KEY21904.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
lexA2; lexa2
L3_068_243G1_scaffold_374_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18648..19682)
DNA (1035bp) protein (345aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
Histidine kinase sensor of two-component system n=17 Tax=Bifidobacterium RepID=Q8G5K8_BIFLO
two-component sensor kinase
L3_068_243G1_scaffold_374_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19721..20443)
DNA (723bp) protein (241aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=19 Tax=Bifidobacterium RepID=D6D978_BIFLN
two-component response regulator
Chemotaxis protein CheY {ECO:0000313|EMBL:AIW43581.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_068_243G1_scaffold_374_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20479..22731)
DNA (2253bp) protein (751aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
1,4-alpha-glucan branching enzyme GlgB n=3 Tax=Bifidobacterium RepID=E8MHN7_BIFL2
glycosyl hydrolase
L3_068_243G1_scaffold_374_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22909..23502
DNA (594bp) protein (198aa)
Transcriptional_regulator n=10 Tax=Bifidobacterium longum RepID=B3DSS8_BIFLD
transcriptional regulator
CarD-like protein {ECO:0000313|EMBL:EIJ23904.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_068_243G1_scaffold_374_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23609..24133
DNA (525bp) protein (175aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Bifidobacterium RepID=C2GU89_BIFLN
L3_068_243G1_scaffold_374_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24185..25018)
DNA (834bp) protein (278aa)
ABC-type Mn2+/Zn2+ transport systems permease component n=14 Tax=Bifidobacterium RepID=B3DSS6_BIFLD
ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:EEI81015.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_068_243G1_scaffold_374_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25085..25975)
DNA (891bp) protein (297aa)
ABC-type Mn2+/Zn2+ transport systems ATPase component n=14 Tax=Bifidobacterium RepID=B3DSS5_BIFLD
ABC transporter ATP-binding protein
ABC-type Mn2+/Zn2+ transport systems ATPase component {ECO:0000313|EMBL:ACD98194.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_243G1_scaffold_374_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26148..27344)
DNA (1197bp) protein (399aa)
ABC-type Mn2+/Zn2+ transport system periplasmic component n=8 Tax=Bifidobacterium RepID=B3DSS4_BIFLD
ABC transporter substrate-binding protein
ABC transporter substrate binding component {ECO:0000313|EMBL:BAJ70785.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_068_243G1_scaffold_374_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27448..28323
DNA (876bp) protein (292aa)
Bifunctional protein FolD n=18 Tax=Bifidobacterium RepID=FOLD_BIFLO
methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_068_243G1_scaffold_374_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


28443..29918
DNA (1476bp) protein (492aa)
30S ribosomal protein S1 n=13 Tax=Bifidobacterium longum RepID=D6D971_BIFLN
30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:ESV33234.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
L3_068_243G1_scaffold_374_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30092..30709
DNA (618bp) protein (206aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Dephospho-CoA kinase n=8 Tax=Bifidobacterium RepID=COAE_BIFLO
dephospho-CoA kinase
L3_068_243G1_scaffold_374_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30721..32832
DNA (2112bp) protein (704aa)
UvrABC system protein B n=14 Tax=Bifidobacterium RepID=D6D969_BIFLN
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Excinuclease ABC subunit B
Displaying items 1-30 of 37 in total

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