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L3_068_243G1_scaffold_873

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_243G1_scaffold_873_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..632)
DNA (630bp) protein (210aa)
ABC-type transport system for lipoprotein release ATPase component n=12 Tax=Bacteria RepID=B3DTI9_BIFLD
ABC transporter ATP-binding protein
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEY31668.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_068_243G1_scaffold_873_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(645..1868)
DNA (1224bp) protein (408aa)
ABC transporter permease component n=10 Tax=root RepID=E8MGW3_BIFL2
ABC transporter permease
ABC transporter permease component {ECO:0000313|EMBL:BAJ66016.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_068_243G1_scaffold_873_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1865..3232)
DNA (1368bp) protein (456aa)
ABC-type transporter similar to Vex3 (VexP3) of S. pneumoniae n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G7J6_BIFLO
ABC transporter permease {ECO:0000313|EMBL:KEY31670.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
ABC transporter
L3_068_243G1_scaffold_873_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3381..4964)
DNA (1584bp) protein (528aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=C2GTC1_BIFLN
Membrane protein {ECO:0000313|EMBL:KHD95112.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
hypothetical protein
L3_068_243G1_scaffold_873_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5238..5954
DNA (717bp) protein (239aa)
Peptidase C26 n=10 Tax=root RepID=I3AR52_BIFLN
Amidotransferase {ECO:0000313|EMBL:KHD95113.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
peptidase
L3_068_243G1_scaffold_873_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6138..7655)
DNA (1518bp) protein (506aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L-arabinose isomerase n=20 Tax=root RepID=ARAA_BIFLD
araA; araa
L3_068_243G1_scaffold_873_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7887..8579)
DNA (693bp) protein (231aa)
Ribulose-5-phosphate 4-epimerase n=18 Tax=root RepID=B3DTJ6_BIFLD
araD; arad
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:AAN24114.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_068_243G1_scaffold_873_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8664..10073)
DNA (1410bp) protein (470aa)
Ribulokinase n=3 Tax=root RepID=V6XZE1_BIFLN
Sugar (pentulose and hexulose) kinases
Probable sugar kinase {ECO:0000313|EMBL:AAN24115.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_068_243G1_scaffold_873_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10346..11461)
DNA (1116bp) protein (372aa)
LacI-type transcriptional regulator n=11 Tax=root RepID=Q8G7J0_BIFLO
transcriptional regulator, LacI family
LacI family transcriptional regulator {ECO:0000313|EMBL:KEY23397.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_243G1_scaffold_873_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11588..12415)
DNA (828bp) protein (276aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Ribonuclease n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R084_BIFLM
rnhB; rnhb
L3_068_243G1_scaffold_873_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12535..13374)
DNA (840bp) protein (280aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
Signal peptidase I n=1 Tax=Bifidobacterium longum subsp. longum 1-6B RepID=I3B226_BIFLN
signal peptidase I
L3_068_243G1_scaffold_873_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(13541..13906)
DNA (366bp) protein (122aa)
50S ribosomal protein L19 n=21 Tax=root RepID=B3DTK1_BIFLD
rplS; rpls
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_068_243G1_scaffold_873_13
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14525..16315
DNA (1791bp) protein (597aa)
ABC-type anion transport system, duplicated permease component n=4 Tax=Bifidobacterium RepID=D6D9Y7_BIFLN
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:EFV37997.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
ABC-type anion transport system, duplicated permease component
L3_068_243G1_scaffold_873_14
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16334..17743
DNA (1410bp) protein (470aa)
ABC transporter n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XWN8_9BIFI
ABC transporter {ECO:0000313|EMBL:EFV37996.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
ABC transporter ATP-binding protein
L3_068_243G1_scaffold_873_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17909..18286)
DNA (378bp) protein (126aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
Glucose-6-phosphate isomerase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRC2_BIFBI
glucose-6-phosphate isomerase
L3_068_243G1_scaffold_873_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18238..19644)
DNA (1407bp) protein (469aa)
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
Glucose-6-phosphate isomerase n=3 Tax=Bifidobacterium RepID=D6D9Y9_BIFLN
L3_068_243G1_scaffold_873_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20366..21367
DNA (1002bp) protein (334aa)
Predicted permeases n=7 Tax=root RepID=D6D9Z0_BIFLN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ70474.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_068_243G1_scaffold_873_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21450..22730)
DNA (1281bp) protein (427aa)
Peptidoglycan branched peptide synthesis protein n=3 Tax=Bifidobacterium longum RepID=E8MGV0_BIFL2
peptidoglycan branched peptide synthesis protein
Peptidoglycan branched peptide synthesis protein {ECO:0000313|EMBL:BAJ70473.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_068_243G1_scaffold_873_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22780..24090)
DNA (1311bp) protein (437aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AT52_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI98128.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L3_068_243G1_scaffold_873_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24164..25432)
DNA (1269bp) protein (423aa)
Peptidoglycan branched peptide synthesis protein n=9 Tax=Bifidobacterium longum RepID=E8MGU8_BIFL2
peptidoglycan branched peptide synthesis protein
Peptidoglycan bridge formation protein FemAB {ECO:0000313|EMBL:KEY23420.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_243G1_scaffold_873_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(25879..26637)
DNA (759bp) protein (253aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Non-canonical purine NTP pyrophosphatase n=10 Tax=Bifidobacterium RepID=NTPA_BIFLO
hypothetical protein
L3_068_243G1_scaffold_873_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26681..27457)
DNA (777bp) protein (259aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Ribonuclease PH n=1 Tax=Bifidobacterium longum (strain DJO10A) RepID=B3DTK8_BIFLD
rph; rph
L3_068_243G1_scaffold_873_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27589..28431)
DNA (843bp) protein (281aa)
Fis family transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AT56_BIFLN
Fis family transcriptional regulator
Fis family transcriptional regulator {ECO:0000313|EMBL:AEI98132.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
Displaying 23 items

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