ggKbase home page

L3_068_243G1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_243G1_scaffold_43_1
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..1005)
DNA (1005bp) protein (335aa)
Sugar porter (SP) family MFS transporter n=4 Tax=Bacteroides RepID=I8YS85_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EGM98337.1}; Flags: Fragment;; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
arabinose-proton symporter
L3_068_243G1_scaffold_43_2
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1011..2108)
DNA (1098bp) protein (366aa)
Tat (Twin-arginine translocation) pathway signal sequence domain protein n=2 Tax=Bacteroides RepID=D4WL02_BACOV
Tat (Twin-arginine translocation) pathway signal sequence domain protein {ECO:0000313|EMBL:EFF50822.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
hypothetical protein
L3_068_243G1_scaffold_43_3
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2153..4027)
DNA (1875bp) protein (625aa)
Uncharacterized protein n=5 Tax=Bacteroides RepID=I8Y6L0_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EGM98339.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
FAD binding domain.
L3_068_243G1_scaffold_43_4
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4035..4136)
DNA (102bp) protein (34aa)
Conserved domain protein n=2 Tax=Bacteroides xylanisolvens RepID=D4VM74_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDM06422.1}; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
L3_068_243G1_scaffold_43_5
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4362..5570
DNA (1209bp) protein (403aa)
ROK family protein n=12 Tax=Bacteroides RepID=C3QC45_9BACE
ROK family protein {ECO:0000313|EMBL:EFF50819.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
xylose repressor
L3_068_243G1_scaffold_43_6
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5573..5668)
DNA (96bp) protein (32aa)
Uncharacterized protein n=8 Tax=Bacteroides RepID=G1UL12_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM98341.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
hypothetical protein
L3_068_243G1_scaffold_43_7
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5973..8015)
DNA (2043bp) protein (681aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R6J349_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB57093.1}; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
Protein of unknown function (DUF3352)./MORN repeat variant.
L3_068_243G1_scaffold_43_8
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8228..8809
DNA (582bp) protein (194aa)
Uncharacterized protein n=5 Tax=Bacteroides RepID=A7LVD9_BACOV
Putative uncharacterized protein {ECO:0000313|EMBL:EFF50817.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
hypothetical protein
L3_068_243G1_scaffold_43_9
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8837..9715
DNA (879bp) protein (293aa)
DNA/RNA non-specific endonuclease n=2 Tax=Bacteroides RepID=D4WKZ6_BACOV
DNA/RNA non-specific endonuclease {ECO:0000313|EMBL:CDB57095.1}; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
DNA/RNA endonuclease G, NUC1
L3_068_243G1_scaffold_43_10
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10174..11211
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Bacteroides ovatus SD CMC 3f RepID=D4WKZ5_BACOV
Putative uncharacterized protein {ECO:0000313|EMBL:EFF50815.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
Predicted periplasmic solute-binding protein
L3_068_243G1_scaffold_43_11
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11295..12887
DNA (1593bp) protein (531aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits (EC:1.2.7.8)
Putative indolepyruvate ferredoxin oxidoreductase, alpha subunit n=1 Tax=Bacteroides ovatus SD CMC 3f RepID=D4WKZ4_BACOV
L3_068_243G1_scaffold_43_12
Bacteroides sp. D22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12891..13475
DNA (585bp) protein (195aa)
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit (EC:1.2.7.8)
Indolepyruvate oxidoreductase subunit beta n=8 Tax=Bacteroides RepID=C3QC39_9BACE
Indolepyruvate ferredoxin oxidoreductase, beta subunit {ECO:0000313|EMBL:EFI14434.1}; TaxID=585544 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D22.;"
L3_068_243G1_scaffold_43_13
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13487..14794
DNA (1308bp) protein (436aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
Phenylacetate-CoA ligase family protein n=1 Tax=Bacteroides ovatus SD CMC 3f RepID=D4WKZ2_BACOV
phenylacetate-coenzyme A ligase
L3_068_243G1_scaffold_43_14
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14885..15457
DNA (573bp) protein (191aa)
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
Xanthine phosphoribosyltransferase n=10 Tax=Bacteroides RepID=D6CX54_9BACE
L3_068_243G1_scaffold_43_15
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15475..16236)
DNA (762bp) protein (254aa)
4Fe-4S binding domain protein n=1 Tax=Bacteroides ovatus SD CMC 3f RepID=D4WKZ0_BACOV
4Fe-4S binding domain protein {ECO:0000313|EMBL:EFF50810.1}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
hypothetical protein
L3_068_243G1_scaffold_43_16
Bacteroides sp. D22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(16595..16945)
DNA (351bp) protein (117aa)
50S ribosomal protein L20 n=29 Tax=Bacteroides RepID=RL20_BACTN
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=585544 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. D22.;"
L3_068_243G1_scaffold_43_17
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(17044..17241)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=18 Tax=Bacteroides RepID=D6CX50_9BACE
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=483215 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii DSM 17565.;"
L3_068_243G1_scaffold_43_18
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17310..17921)
DNA (612bp) protein (204aa)
Translation initiation factor IF-3 n=1 Tax=Bacteroides ovatus SD CMC 3f RepID=D4WKY8_BACOV
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
bacterial translation initiation factor 3 (bIF-3)
L3_068_243G1_scaffold_43_19
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17994..19934)
DNA (1941bp) protein (647aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=702443 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus SD CMC 3f.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=3 Tax=Bacteroides RepID=D6CX48_9BACE
L3_068_243G1_scaffold_43_20
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20017..22047)
DNA (2031bp) protein (677aa)
TPR domain protein n=3 Tax=Bacteroides RepID=D7K9J9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY65998.1}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
Tetratricopeptide repeat.
L3_068_243G1_scaffold_43_21
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22124..22678)
DNA (555bp) protein (185aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=6 Tax=Bacteroides RepID=A7LVC5_BACOV
L3_068_243G1_scaffold_43_22
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22723..23139)
DNA (417bp) protein (139aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
Putative Holliday junction resolvase n=2 Tax=Bacteroides RepID=D4WKY4_BACOV
conserved hypothetical protein TIGR00250
L3_068_243G1_scaffold_43_23
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23214..24353)
DNA (1140bp) protein (380aa)
OmpA family protein n=5 Tax=Bacteroides RepID=D4WKY3_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY58672.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;"
Outer membrane protein and related peptidoglycan-associated (lipo)proteins
L3_068_243G1_scaffold_43_24
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24673..25641)
DNA (969bp) protein (323aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R6J791_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB57110.1}; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
hypothetical protein
L3_068_243G1_scaffold_43_25
Bacteroides sp. 1_1_30, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25667..26773)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=C3QP60_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGM99365.1}; TaxID=457387 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_30.;"
hypothetical protein
L3_068_243G1_scaffold_43_26
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26856..28316)
DNA (1461bp) protein (487aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00062, ECO:0000256|SAAS:SAAS00055979};; ATP-sulfurylase large subunit {ECO:0000256|HAMAP-Rule:MF_00062}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00062}; TaxID=997885 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL02T12C04.;"
sulfate adenylyltransferase subunit 1 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 1 n=8 Tax=Bacteroides RepID=C3QP61_9BACE
L3_068_243G1_scaffold_43_27
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28329..29237)
DNA (909bp) protein (303aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=411476 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC; 11153).;"
sulfate adenylyltransferase subunit 2 (EC:2.7.7.4)
Sulfate adenylyltransferase subunit 2 n=10 Tax=Bacteroides RepID=A7LVB9_BACOV
L3_068_243G1_scaffold_43_28
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29245..29853)
DNA (609bp) protein (203aa)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
adenylylsulfate kinase (EC:2.7.1.25)
Adenylyl-sulfate kinase n=9 Tax=Bacteroides RepID=A7LVB8_BACOV
L3_068_243G1_scaffold_43_29
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29866..31419)
DNA (1554bp) protein (518aa)
Putative ATP synthase F0, A subunit n=2 Tax=Bacteroides RepID=D4WKX7_BACOV
Putative ATP synthase F0 A subunit {ECO:0000313|EMBL:CDB57115.1}; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
Di-and tricarboxylate transporters
L3_068_243G1_scaffold_43_30
Bacteroides ovatus CAG:22, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31431..32255)
DNA (825bp) protein (275aa)
3'(2'),5'-bisphosphate nucleotidase (EC:3.1.3.7)
3'(2'),5'-bisphosphate nucleotidase n=4 Tax=Bacteroides RepID=D7J1G5_9BACE
3' 5'-bisphosphate nucleotidase {ECO:0000313|EMBL:CDB57116.1}; TaxID=1263050 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides ovatus CAG:22.;"
Displaying items 1-30 of 98 in total

View Taxonomy