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L3_068_368G1_scaffold_21

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_21_1
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2..796)
DNA (795bp) protein (265aa)
Type I restriction modification DNA specificity domain protein n=1 Tax=Bacteroides dorei 5_1_36/D4 RepID=G1UL77_9BACE
Type I restriction modification DNA specificity domain protein {ECO:0000313|EMBL:EGX26886.1}; TaxID=556260 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei 5_1_36/D4.;"
type I restriction modification protein
L3_068_368G1_scaffold_21_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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1395..1604
DNA (210bp) protein (70aa)
DNA binding domain, excisionase family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2E4_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:EDM97531.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative transposon excisionase
L3_068_368G1_scaffold_21_3
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1731..2885
DNA (1155bp) protein (385aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HSJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE95728.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Site-specific recombinase XerD
L3_068_368G1_scaffold_21_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3101..3607
DNA (507bp) protein (169aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV52_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:CDA54905.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4010..9580
DNA (5571bp) protein (1857aa)
Alpha amylase, catalytic domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFQ6_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEU99350.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Glycosidases
L3_068_368G1_scaffold_21_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10081..11412
DNA (1332bp) protein (444aa)
aspartyl-tRNA synthetase, archaeal type (EC:6.1.1.23)
Aspartyl-tRNA synthetase, archaeal type {ECO:0000313|EMBL:CBL14118.1}; EC=6.1.1.23 {ECO:0000313|EMBL:CBL14118.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Aspartyl-tRNA synthetase, archaeal type n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3C8_9FIRM
L3_068_368G1_scaffold_21_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11536..12450
DNA (915bp) protein (305aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV46_9FIRM
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000313|EMBL:CDA54900.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
glutamyl-tRNA(Gln) amidotransferase subunit C
L3_068_368G1_scaffold_21_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12519..13988
DNA (1470bp) protein (490aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.- 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120, ECO:0000313|EMBL:CBL14119.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3C9_9FIRM
L3_068_368G1_scaffold_21_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14010..15440
DNA (1431bp) protein (477aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV36_9FIRM
L3_068_368G1_scaffold_21_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15791..16306
DNA (516bp) protein (172aa)
Predicted HD superfamily hydrolase n=2 Tax=Roseburia intestinalis RepID=D4KSB0_9FIRM
Predicted HD superfamily hydrolase
Predicted HD superfamily hydrolase {ECO:0000313|EMBL:CBL09762.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_21_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16395..18323)
DNA (1929bp) protein (643aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSA9_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL09761.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_368G1_scaffold_21_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18323..20071)
DNA (1749bp) protein (583aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3D3_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL14123.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_21_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20195..20695
DNA (501bp) protein (167aa)
Transcriptional regulators n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSA7_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL09759.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_21_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20949..23138
DNA (2190bp) protein (730aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EEU99338.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EEU99338.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFP4_9FIRM
L3_068_368G1_scaffold_21_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23250..23639
DNA (390bp) protein (130aa)
Thioesterase superfamily n=4 Tax=Roseburia RepID=D4KSA5_9FIRM
Thioesterase superfamily
Thioesterase superfamily {ECO:0000313|EMBL:CDA57312.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23649..24425
DNA (777bp) protein (259aa)
Predicted divalent heavy-metal cations transporter n=3 Tax=Roseburia RepID=D4L3D7_9FIRM
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:CDA57311.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted divalent heavy-metal cations transporter
L3_068_368G1_scaffold_21_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24440..24790
DNA (351bp) protein (117aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GFP1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57310.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24802..25572
DNA (771bp) protein (257aa)
Uncharacterized conserved protein n=4 Tax=Roseburia RepID=D4KSA3_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CDA57309.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25636..26286
DNA (651bp) protein (217aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GFN9_9FIRM
RNAse H family protein {ECO:0000313|EMBL:CDA57308.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNAse H family protein
L3_068_368G1_scaffold_21_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26310..27413
DNA (1104bp) protein (368aa)
Transcriptional regulator, GntR family n=5 Tax=Roseburia RepID=D4KSA1_9FIRM
transcriptional regulator, GntR family
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDA57307.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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27417..27935
DNA (519bp) protein (173aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN8_9FIRM
L3_068_368G1_scaffold_21_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28046..28294
DNA (249bp) protein (83aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B2D1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57305.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28324..29397
DNA (1074bp) protein (358aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GGN6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57304.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29462..29593)
DNA (132bp) protein (44aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GGN5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA57303.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_21_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29874..30629
DNA (756bp) protein (252aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3E6_9FIRM
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CBL14136.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_21_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30663..32159
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99027.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Putative RNA methylase family UPF0020.
L3_068_368G1_scaffold_21_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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32166..34817
DNA (2652bp) protein (884aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN1_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEU99026.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
diguanylate cyclase (GGDEF) domain
L3_068_368G1_scaffold_21_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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35299..36393
DNA (1095bp) protein (365aa)
RelA/SpoT domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GGN0_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:EEU99025.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Guanosine polyphosphate pyrophosphohydrolases/synthetases
L3_068_368G1_scaffold_21_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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36511..37524
DNA (1014bp) protein (338aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=2 Tax=Roseburia RepID=R6BE40_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_068_368G1_scaffold_21_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37763..39595
DNA (1833bp) protein (611aa)
DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
DNA primase n=3 Tax=Roseburia RepID=D4L3F0_9FIRM
Displaying items 1-30 of 117 in total

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