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L3_068_368G1_scaffold_88

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_88_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(93..2240)
DNA (2148bp) protein (716aa)
Beta-xylosidase (EC:3.2.1.37)
Beta-xylosidase n=2 Tax=Roseburia RepID=D4KUT9_9FIRM
Beta-xylosidase {ECO:0000313|EMBL:CDA56579.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2478..3980
DNA (1503bp) protein (501aa)
ABC-type sugar transport system, ATPase component (EC:3.6.3.17)
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:CBL11130.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CBL11130.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ABC-type sugar transport system, ATPase component n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUU0_9FIRM
L3_068_368G1_scaffold_88_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3994..4959
DNA (966bp) protein (322aa)
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components n=2 Tax=Roseburia RepID=D4KUU1_9FIRM
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components {ECO:0000313|EMBL:CBL11131.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_88_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5030..6244
DNA (1215bp) protein (405aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B6G6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56574.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6371..7375
DNA (1005bp) protein (335aa)
Sugar ABC transporter permease protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXG9_9FIRM
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CDA56573.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
sugar ABC transporter permease
L3_068_368G1_scaffold_88_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7395..9080
DNA (1686bp) protein (562aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.52)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579, ECO:0000313|EMBL:CBL11133.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Beta-glucosidase-related glycosidases n=2 Tax=Roseburia RepID=D4KUU3_9FIRM
L3_068_368G1_scaffold_88_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9102..10586
DNA (1485bp) protein (495aa)
rha78B; alpha-L-rhamnosidase (EC:3.2.1.40)
Alpha-L-rhamnosidase Rha78B n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BBU0_9FIRM
Alpha-L-rhamnosidase Rha78B {ECO:0000313|EMBL:CDA56571.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10602..12335
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B6G2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56569.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_068_368G1_scaffold_88_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12470..13888
DNA (1419bp) protein (473aa)
rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=2 Tax=Roseburia RepID=D4KUU5_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:CDA56568.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13905..15155
DNA (1251bp) protein (417aa)
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541, ECO:0000313|EMBL:CBL11136.1}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541, ECO:0000313|EMBL:CBL11136.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L-rhamnose isomerase n=2 Tax=Roseburia RepID=D4KUU6_9FIRM
L3_068_368G1_scaffold_88_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15231..16052
DNA (822bp) protein (274aa)
L-rhamnulose 1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Rhamnulose-1-phosphate aldolase n=2 Tax=Roseburia RepID=D4KUU7_9FIRM
L3_068_368G1_scaffold_88_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16278..16721
DNA (444bp) protein (148aa)
Transcriptional regulators n=2 Tax=Roseburia RepID=D4KUU8_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL11138.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_88_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16714..18000
DNA (1287bp) protein (429aa)
Predicted membrane protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B6F2_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CDA56564.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted membrane protein
L3_068_368G1_scaffold_88_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18116..19804
DNA (1689bp) protein (563aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXF9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56563.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_068_368G1_scaffold_88_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20015..22990
DNA (2976bp) protein (992aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Putative beta-glucosidase A n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BSE7_9FIRM
Putative beta-glucosidase A {ECO:0000313|EMBL:CDA56222.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23038..23601
DNA (564bp) protein (188aa)
GtrA-like protein n=4 Tax=Roseburia RepID=D4KKK5_9FIRM
GtrA-like protein.
GtrA-like protein {ECO:0000313|EMBL:CDA56224.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23790..24410
DNA (621bp) protein (207aa)
Transcriptional regulator TetR family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZ03_9FIRM
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDA56225.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Transcriptional regulator
L3_068_368G1_scaffold_88_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24533..26317
DNA (1785bp) protein (595aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDV0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU99976.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_368G1_scaffold_88_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26321..28054
DNA (1734bp) protein (578aa)
ABC transporter, ATP-binding protein n=2 Tax=Roseburia RepID=C7GDU9_9FIRM
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CDA56228.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ABC transporter, permease/ATP-binding protein
L3_068_368G1_scaffold_88_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28116..28631)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUV6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11146.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_88_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29008..29964
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56232.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Putative transposase, YhgA-like.
L3_068_368G1_scaffold_88_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30040..30549)
DNA (510bp) protein (170aa)
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99972.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_068_368G1_scaffold_88_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30746..30889
DNA (144bp) protein (48aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11149.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_88_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30886..31425
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUW0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07411.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_88_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31614..32678
DNA (1065bp) protein (355aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched chain amino acid aminotransferase apoenzyme {ECO:0000313|EMBL:CBL11152.1}; EC=2.6.1.42 {ECO:0000313|EMBL:CBL11152.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Branched chain amino acid aminotransferase apoenzyme n=2 Tax=Roseburia RepID=D4KUW2_9FIRM
L3_068_368G1_scaffold_88_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32897..34399
DNA (1503bp) protein (501aa)
Zn-dependent carboxypeptidase (EC:3.4.17.19)
Thermostable carboxypeptidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BSG2_9FIRM
Thermostable carboxypeptidase {ECO:0000313|EMBL:CDA56237.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34456..35109
DNA (654bp) protein (218aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=2 Tax=Roseburia RepID=D4KKL3_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CDA56239.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_88_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35106..36089
DNA (984bp) protein (328aa)
Exopolyphosphatase-related proteins n=2 Tax=Roseburia intestinalis RepID=D4KUW7_9FIRM
Exopolyphosphatase-related proteins
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CBL11157.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_88_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36584..39775
DNA (3192bp) protein (1064aa)
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Isoleucine--tRNA ligase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKL5_9FIRM
L3_068_368G1_scaffold_88_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39776..42235
DNA (2460bp) protein (820aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8Z7_9FIRM
Displaying items 1-30 of 66 in total

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