ggKbase home page

L3_068_368G1_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_104_1
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2..136)
DNA (135bp) protein (45aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1432556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae ISC8.;"
Alanine--tRNA ligase n=1 Tax=Serratia liquefaciens ATCC 27592 RepID=S5ECN5_SERLI
SBOV28501; hypothetical protein
L3_068_368G1_scaffold_104_2
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265..765)
DNA (501bp) protein (167aa)
recombination regulator RecX n=1 Tax=Escherichia albertii RepID=UPI0002B9C4EC
Recombination regulator RecX {ECO:0000313|EMBL:AKE59711.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
recX; recombination regulator RecX
L3_068_368G1_scaffold_104_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(882..1943)
DNA (1062bp) protein (354aa)
Protein RecA n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLF9_CITRI
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
recA; RecA protein (recombinase A)
L3_068_368G1_scaffold_104_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2024..2521)
DNA (498bp) protein (166aa)
Protein YgaD n=6 Tax=Escherichia coli RepID=F4T426_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:AKE59713.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L3_068_368G1_scaffold_104_5
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2665..3744)
DNA (1080bp) protein (360aa)
mltB; membrane-bound lytic transglycosylase B (EC:3.2.1.-)
Membrane-bound lytic transglycosylase B n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLF7_CITRI
Murein hydrolase effector LrgB {ECO:0000313|EMBL:AKE59714.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
L3_068_368G1_scaffold_104_6
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4014..4577
DNA (564bp) protein (188aa)
Glucitol/sorbitol permease IIC component n=2 Tax=Enterobacter cloacae RepID=G8LPM0_ENTCL
Glucitol/sorbitol-specific phosphotransferase system enzyme IIC component {ECO:0000313|EMBL:GAL50265.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
srlA; glucitol/sorbitol permease IIC component
L3_068_368G1_scaffold_104_7
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4574..5563
DNA (990bp) protein (330aa)
srlE; glucitol/sorbitol-specific PTS system EIIB component (EC:2.7.1.69)
Glucitol/sorbitol-specific PTS system EIIB component n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLF5_CITRI
Glucitol/sorbitol-specific phosphotransferase system enzyme IIB component {ECO:0000313|EMBL:GAL50264.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_104_8
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5575..5937
DNA (363bp) protein (121aa)
srlB; glucitol/sorbitol-specific PTS system EIIA component (EC:2.7.1.-)
Glucitol/sorbitol-specific PTS system EIIA component n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLF4_CITRI
PTS system glucitol/sorbitol-specific transporter subunit IIA {ECO:0000313|EMBL:AKE59717.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
L3_068_368G1_scaffold_104_9
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5948..6727
DNA (780bp) protein (260aa)
sorbitol-6-phosphate dehydrogenase (EC:1.1.1.140)
Sorbitol-6-phosphate 2-dehydrogenase n=1 Tax=Salmonella enterica subsp. houtenae serovar 16:z4,z32:-- str. RKS3027 RepID=R0EJH0_SALHO
Sorbitol-6-phosphate 2-dehydrogenase {ECO:0000313|EMBL:GAL50262.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_104_10
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6819..7178
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MAM6_9ENTR
Glucitol operon activator protein {ECO:0000313|EMBL:GAL50261.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
DNA-binding transcriptional activator GutM
L3_068_368G1_scaffold_104_11
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7247..8020
DNA (774bp) protein (258aa)
Glucitol operon repressor n=9 Tax=Citrobacter RepID=C1MAM7_9ENTR
Transcriptional repressor SrlR {ECO:0000313|EMBL:GAL50260.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
srlR; transcriptional regulator
L3_068_368G1_scaffold_104_12
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8013..8978
DNA (966bp) protein (322aa)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
Arabinose 5-phosphate isomerase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLF0_CITRI
srlQ; D-arabinose 5-phosphate isomerase
L3_068_368G1_scaffold_104_13
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8975..10492)
DNA (1518bp) protein (506aa)
Anaerobic nitric oxide reductase transcription regulator NorR n=1 Tax=Citrobacter sp. KTE151 RepID=R8WPE9_9ENTR
Anaerobic nitric oxide reductase transcription regulator NorR {ECO:0000256|HAMAP-Rule:MF_01314, ECO:0000256|SAAS:SAAS00009293}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
transcriptional regulator
L3_068_368G1_scaffold_104_14
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10681..12123
DNA (1443bp) protein (481aa)
Anaerobic nitric oxide reductase flavorubredoxin n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=NORV_CITK8
Anaerobic nitric oxide reductase flavorubredoxin {ECO:0000256|HAMAP-Rule:MF_01312}; Short=FlRd {ECO:0000256|HAMAP-Rule:MF_01312};; Short=FlavoRb {ECO:0000256|HAMAP-Rule:MF_01312};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
anaerobic nitric oxide reductase flavorubredoxin
L3_068_368G1_scaffold_104_15
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12120..13253
DNA (1134bp) protein (378aa)
Nitric oxide reductase FlRd-NAD(+) reductase {ECO:0000256|HAMAP-Rule:MF_01313, ECO:0000256|SAAS:SAAS00194831}; EC=1.18.1.- {ECO:0000256|HAMAP-Rule:MF_01313, ECO:0000256|SAAS:SAAS00194837};; Flavorubredoxin reductase {ECO:0000256|HAMAP-Rule:MF_01313}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Nitric oxide reductase FlRd-NAD(+) reductase n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9S9Z8_CITFR
nitric oxide reductase
L3_068_368G1_scaffold_104_16
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13328..15589)
DNA (2262bp) protein (754aa)
Carbamoyltransferase hypF n=1 Tax=Citrobacter sp. KTE32 RepID=R8V263_9ENTR
NiFe-hydrogenases maturation protein HypF {ECO:0000313|EMBL:GAL50255.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
carbamoyl phosphate phosphatase
L3_068_368G1_scaffold_104_17
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15738..16283)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8ANS1_CITK8
Formate dehydrogenase {ECO:0000313|EMBL:AKE59726.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
electron transport protein HydN
L3_068_368G1_scaffold_104_18
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16429..17442)
DNA (1014bp) protein (338aa)
Cryptic asc operon repressor n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLE4_CITRI
Putative transcriptional regulator AscG {ECO:0000313|EMBL:GAL50253.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
ascG; cryptic asc operon repressor
L3_068_368G1_scaffold_104_19
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17708..19162
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8ANS3_CITK8
Uncharacterized protein {ECO:0000313|EMBL:KDF09412.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC
L3_068_368G1_scaffold_104_20
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19185..20609
DNA (1425bp) protein (475aa)
6-phospho-beta-glucosidase AscB n=1 Tax=Citrobacter sp. 30_2 RepID=C1MAN6_9ENTR
6-phospho-beta-glucosidase AscB {ECO:0000313|EMBL:GAL50251.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
cryptic 6-phospho-beta-glucosidase
L3_068_368G1_scaffold_104_21
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20790..21041
DNA (252bp) protein (84aa)
Putative exported protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLE1_CITRI
Uncharacterized protein {ECO:0000313|EMBL:GAL50250.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_104_22
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21068..21532)
DNA (465bp) protein (155aa)
hycI; hydrogenase 3 maturation protease (EC:3.4.-.-)
hydrogenase 3 maturation protease n=1 Tax=Salmonella choleraesuis RepID=UPI0002BB5B29
NiFe-hydrogenase 3 maturation protease {ECO:0000313|EMBL:GAL50249.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_104_23
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21525..21935)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8ANS6_CITK8
Formate hydrogenlyase maturation protein HycH {ECO:0000313|EMBL:AKE59732.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L3_068_368G1_scaffold_104_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21932..22699)
DNA (768bp) protein (256aa)
NADH ubiquinone oxidoreductase, 20 Kd subunit n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BHC2_9ENTR
Formate hydrogenlyase {ECO:0000313|EMBL:AKE59733.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
formate hydrogenlyase
L3_068_368G1_scaffold_104_25
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22699..23241)
DNA (543bp) protein (181aa)
Formate hydrogenlyase complex iron-sulfur subunit n=5 Tax=Citrobacter RepID=J0M2X2_9ENTR
Formate hydrogenlyase complex iron-sulfur subunit {ECO:0000313|EMBL:AKE59734.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
formate hydrogenlyase complex iron-sulfur subunit
L3_068_368G1_scaffold_104_26
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23251..24960)
DNA (1710bp) protein (570aa)
hydrogenase 3 large subunit n=1 Tax=Salmonella choleraesuis RepID=UPI0002BB887F
NiFe-hydrogenase 3 large subunit {ECO:0000313|EMBL:GAL50245.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hycE; formate hydrogenlyase subunit 5
L3_068_368G1_scaffold_104_27
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24978..25901)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8ANT0_CITK8
Formate hydrogen lyase membrane subunit HycD {ECO:0000313|EMBL:GAL50244.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_104_28
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25904..27730)
DNA (1827bp) protein (609aa)
Formate hydrogenlyase subunit 3 n=1 Tax=Citrobacter sp. KTE30 RepID=R8ULT2_9ENTR
Formate hydrogen lyase membrane subunit HycC {ECO:0000313|EMBL:GAL50243.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
formate hydrogenlyase subunit 3
L3_068_368G1_scaffold_104_29
Citrobacter rodentium, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27727..28338)
DNA (612bp) protein (204aa)
Formate hydrogenlyase subunit 2 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLD1_CITRI
hycB; formate hydrogenlyase subunit 2
Formate hydrogenlyase subunit 2 {ECO:0000313|EMBL:CBG89816.1}; Flags: Precursor;; TaxID=637910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype; 4280).;"
L3_068_368G1_scaffold_104_30
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28475..28936)
DNA (462bp) protein (154aa)
Formate hydrogenlyase regulatory protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TLD0_CITRI
Hyc/hyp operon regulatory protein HycA {ECO:0000313|EMBL:GAL50241.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hycA; formate hydrogenlyase regulatory protein
Displaying items 1-30 of 81 in total

View Taxonomy