ggKbase home page

L3_068_368G1_scaffold_136

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_136_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(217..678)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76826.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_368G1_scaffold_136_2
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(659..880)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76827.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted transcriptional regulators
L3_068_368G1_scaffold_136_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1042..2058
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76828.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
L3_068_368G1_scaffold_136_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2477..3589
DNA (1113bp) protein (371aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76829.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_068_368G1_scaffold_136_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3734..4822
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76830.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_368G1_scaffold_136_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5012..6070)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=T5LV90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQM98729.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type sulfate/molybdate transport systems, ATPase component
L3_068_368G1_scaffold_136_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6070..6765)
DNA (696bp) protein (232aa)
Molybdate ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR07_9FIRM
Molybdate ABC transporter permease protein {ECO:0000313|EMBL:CDD80107.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
molybdate ABC transporter, permease protein
L3_068_368G1_scaffold_136_8
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6768..7667)
DNA (900bp) protein (300aa)
Molybdate ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDT3_9FIRM
Molybdate ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EES76832.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
molybdenum ABC transporter, periplasmic molybdate-binding protein
L3_068_368G1_scaffold_136_9
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8047..8259
DNA (213bp) protein (71aa)
Molybdenum-pterin binding domain-containing protein n=2 Tax=Ruminococcus RepID=C6JDT4_9FIRM
Molybdenum-pterin-binding protein {ECO:0000313|EMBL:CDD80109.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Molybdopterin-binding protein
L3_068_368G1_scaffold_136_10
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8252..9190
DNA (939bp) protein (313aa)
Excisionase family DNA binding domain-containing protein n=2 Tax=Ruminococcus RepID=C6JDT5_9FIRM
Periplasmic molybdate-binding protein {ECO:0000313|EMBL:CDD80111.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
DNA binding domain, excisionase family
L3_068_368G1_scaffold_136_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9280..10296)
DNA (1017bp) protein (339aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=2 Tax=Ruminococcus RepID=C6JDT6_9FIRM
L3_068_368G1_scaffold_136_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10468..13683)
DNA (3216bp) protein (1072aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbamoyl-phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDT7_9FIRM
L3_068_368G1_scaffold_136_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13683..14759)
DNA (1077bp) protein (359aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
carbamoyl-phosphate synthase, small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CR17_9FIRM
L3_068_368G1_scaffold_136_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15307..16434)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80120.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Beta-mannanase
L3_068_368G1_scaffold_136_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16590..18095)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80121.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
N-acetylmuramoyl-L-alanine amidase
L3_068_368G1_scaffold_136_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18234..18821)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76840.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_068_368G1_scaffold_136_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18877..20295)
DNA (1419bp) protein (473aa)
ATP-dependent Clp protease, ATP-binding subunit ClpX n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU2_9FIRM
ATP-dependent Clp protease, ATP-binding subunit ClpX {ECO:0000313|EMBL:EES76841.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L3_068_368G1_scaffold_136_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20509..21924)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80126.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_068_368G1_scaffold_136_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22121..23065)
DNA (945bp) protein (315aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80127.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Glycosyltransferases, probably involved in cell wall biogenesis
L3_068_368G1_scaffold_136_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23154..24569)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76844.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
cell envelope-related function transcriptional attenuator common domain
L3_068_368G1_scaffold_136_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24587..25990)
DNA (1404bp) protein (468aa)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU6_9FIRM
Undecaprenyl-phosphate glucose phosphotransferase {ECO:0000313|EMBL:EES76845.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Undecaprenyl-phosphate glucose phosphotransferase
L3_068_368G1_scaffold_136_22
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26074..27030)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76846.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L3_068_368G1_scaffold_136_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27012..28919)
DNA (1908bp) protein (636aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76847.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L3_068_368G1_scaffold_136_24
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29084..30364
DNA (1281bp) protein (427aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76848.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L3_068_368G1_scaffold_136_25
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30471..31931)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76849.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted membrane protein (DUF2142).
L3_068_368G1_scaffold_136_26
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31950..34394)
DNA (2445bp) protein (815aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76850.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L3_068_368G1_scaffold_136_27
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34396..36939)
DNA (2544bp) protein (848aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76851.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted glycosyltransferases
L3_068_368G1_scaffold_136_28
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36906..39098)
DNA (2193bp) protein (731aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76852.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Dimethyladenosine transferase (rRNA methylation)
L3_068_368G1_scaffold_136_29
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39154..40434)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76853.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_068_368G1_scaffold_136_30
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40546..41361)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDV5_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
Displaying items 1-30 of 52 in total

View Taxonomy