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L3_068_368G1_scaffold_152

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_152_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

475..1518
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R810_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK49768.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
cytoplasmic protein
L3_068_368G1_scaffold_152_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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1515..1841
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83607.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_068_368G1_scaffold_152_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1888..2592
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23529.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Domain of unknown function (DUF1848).
L3_068_368G1_scaffold_152_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2871..4703
DNA (1833bp) protein (611aa)
Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Clostridium RepID=R6PJ41_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CDC23530.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
NADPH-dependent glutamate synthase beta chain and related oxidoreductases
L3_068_368G1_scaffold_152_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4697..6298
DNA (1602bp) protein (534aa)
Hydrogenase, Fe-only {ECO:0000313|EMBL:EEA83613.1}; EC=1.12.-.- {ECO:0000313|EMBL:EEA83613.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydrogenases, Fe-only (EC:1.6.5.3)
Hydrogenase, Fe-only n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK28_9CLOT
L3_068_368G1_scaffold_152_6
unknown

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6270..6548
DNA (279bp) protein (93aa)

This feature has no annotations

L3_068_368G1_scaffold_152_7
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6653..7135
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LDT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET61136.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L3_068_368G1_scaffold_152_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7328..7972
DNA (645bp) protein (215aa)
4Fe-4S binding domain protein n=2 Tax=Clostridium RepID=B6FK27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23532.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
(4Fe-4S)-binding protein
L3_068_368G1_scaffold_152_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7926..8888
DNA (963bp) protein (321aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGS7_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA83637.1}; Flags: Fragment;; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
osmoprotectant ABC transporter substrate-binding/permease
L3_068_368G1_scaffold_152_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8924..9196
DNA (273bp) protein (91aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23534.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type transport system, glycinebetaine/carnitine/choline permease
L3_068_368G1_scaffold_152_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9208..10002
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FK23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23535.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glycine/betaine ABC transporter ATP-binding protein
L3_068_368G1_scaffold_152_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10141..10680
DNA (540bp) protein (180aa)
Rubrerythrin n=2 Tax=Clostridium RepID=B6FK22_9CLOT
Rubrerythrin {ECO:0000313|EMBL:EEA83634.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Rubrerythrin
L3_068_368G1_scaffold_152_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10872..12308
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
adenylosuccinate lyase (EC:4.3.2.2)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QNN6_9CLOT
L3_068_368G1_scaffold_152_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12323..13600
DNA (1278bp) protein (426aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=2 Tax=Clostridium RepID=B6FK20_9CLOT
L3_068_368G1_scaffold_152_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13712..15178
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS42_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23539.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe-S oxidoreductase
L3_068_368G1_scaffold_152_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15369..16427
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23540.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_152_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16454..18631)
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23541.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_068_368G1_scaffold_152_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18636..21161)
DNA (2526bp) protein (842aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QNP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23542.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_068_368G1_scaffold_152_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21358..21951
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridium RepID=B6FK15_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA83627.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, TetR family
L3_068_368G1_scaffold_152_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22153..22989
DNA (837bp) protein (279aa)
Transcription antiterminator LicT n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK14_9CLOT
Transcription antiterminator LicT {ECO:0000313|EMBL:EEA83626.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
bglg family transcriptional antiterminator
L3_068_368G1_scaffold_152_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23060..25018
DNA (1959bp) protein (653aa)
PTS system, beta-glucoside-specific, IIABC component {ECO:0000313|EMBL:EEA83625.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEA83625.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system, beta-glucoside-specific, IIABC component n=2 Tax=Clostridium RepID=B6FK13_9CLOT
PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.5)
L3_068_368G1_scaffold_152_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25041..26492
DNA (1452bp) protein (484aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.21)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23546.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_152_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26884..28260
DNA (1377bp) protein (459aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK10_9CLOT
L3_068_368G1_scaffold_152_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28302..28523)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23548.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulator
L3_068_368G1_scaffold_152_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28652..30937
DNA (2286bp) protein (762aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23549.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Two-component sensor histidine kinase
L3_068_368G1_scaffold_152_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30912..31079
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23550.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
winged helix family two component transcriptional regulator
L3_068_368G1_scaffold_152_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31200..32513
DNA (1314bp) protein (438aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYN9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23551.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
uracil-xanthine permease
L3_068_368G1_scaffold_152_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32650..34677
DNA (2028bp) protein (676aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK05_9CLOT
L3_068_368G1_scaffold_152_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34698..35678
DNA (981bp) protein (327aa)
Lysophospholipase (EC:3.1.1.5)
Hydrolase, alpha/beta domain protein n=2 Tax=Clostridium RepID=B6FK04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23553.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_152_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35698..36747
DNA (1050bp) protein (350aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS53_9CLOT
Displaying items 1-30 of 55 in total

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