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L3_068_368G1_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_216_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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172..1623
DNA (1452bp) protein (484aa)
glutamyl-tRNA synthetase, bacterial family (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Glutamate--tRNA ligase n=4 Tax=Roseburia RepID=D4KQF0_9FIRM
L3_068_368G1_scaffold_216_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1692..3533
DNA (1842bp) protein (614aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Superfamily I DNA and RNA helicases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B0N2_9FIRM
L3_068_368G1_scaffold_216_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3530..3841)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6BX40_9FIRM
Protein of unknown function (DUF1292).
Uncharacterized protein {ECO:0000313|EMBL:CBL09104.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_216_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4004..5878
DNA (1875bp) protein (625aa)
Type II secretory pathway, pullulanase PulA and related glycosidases (EC:3.2.1.-)
Glycogen debranching enzyme GlgX n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BF81_9FIRM
Glycogen debranching enzyme GlgX {ECO:0000313|EMBL:CDA57756.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_216_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5903..6541
DNA (639bp) protein (213aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GBX6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11599.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_216_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6489..7382)
DNA (894bp) protein (298aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBX5_9FIRM
L3_068_368G1_scaffold_216_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7483..8106
DNA (624bp) protein (208aa)
RNA polymerase sigma factor n=2 Tax=Roseburia RepID=C7GBX4_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNA polymerase, sigma 27/28 subunit, RpsK/SigK
L3_068_368G1_scaffold_216_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8318..9847
DNA (1530bp) protein (510aa)
Mg chelatase-like protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BX36_9FIRM
Mg chelatase-like protein {ECO:0000313|EMBL:CDA57752.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
putative ATPase with chaperone activity
L3_068_368G1_scaffold_216_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9844..10929
DNA (1086bp) protein (362aa)
DNA processing protein DprA n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BF74_9FIRM
DNA processing protein DprA {ECO:0000313|EMBL:CDA57751.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
putative Rossmann fold nucleotide-binding protein involved in DNA uptake
L3_068_368G1_scaffold_216_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11045..13132
DNA (2088bp) protein (696aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
DNA topoisomerase 1 n=2 Tax=Roseburia RepID=D4KQF7_9FIRM
L3_068_368G1_scaffold_216_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13239..14024
DNA (786bp) protein (262aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=4 Tax=Roseburia RepID=D4KQF8_9FIRM
Pleiotropic transcriptional repressor
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_068_368G1_scaffold_216_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14447..14842
DNA (396bp) protein (132aa)
Flagellar basal body rod protein FlgB n=4 Tax=Roseburia RepID=D4KQF9_9FIRM
flagellar basal-body rod protein FlgB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_216_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14917..15357
DNA (441bp) protein (147aa)
Flagellar basal-body rod protein FlgC n=4 Tax=Roseburia RepID=D4KQG0_9FIRM
flagellar basal-body rod protein FlgC
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_216_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15376..15687
DNA (312bp) protein (104aa)
Flagellar hook-basal body complex protein FliE n=3 Tax=Roseburia intestinalis RepID=D4KQG1_9FIRM
flagellar hook-basal body complex protein FliE
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_216_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15706..17304
DNA (1599bp) protein (533aa)
Flagellar basal-body M-ring protein/flagellar hook-basal body protein (FliF) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B3U3_9FIRM
Flagellar basal-body M-ring protein/flagellar hook-basal body protein (FliF) {ECO:0000313|EMBL:CDA57745.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
L3_068_368G1_scaffold_216_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17308..18321
DNA (1014bp) protein (338aa)
Flagellar motor switch protein FliG n=4 Tax=Roseburia RepID=D4KQG3_9FIRM
flagellar motor switch protein FliG
Flagellar motor switch protein FliG {ECO:0000313|EMBL:CBL11608.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_216_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18314..19108
DNA (795bp) protein (265aa)
Flagellar biosynthesis/type III secretory pathway protein n=2 Tax=Roseburia RepID=R6B0L7_9FIRM
Flagellar biosynthesis/type III secretory pathway protein {ECO:0000313|EMBL:CDA57743.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
flagellar biosynthesis/type III secretory pathway protein
L3_068_368G1_scaffold_216_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19124..20431
DNA (1308bp) protein (436aa)
type III secretion system ATPase, FliI/YscN (EC:3.6.3.14 3.6.3.15)
Type III secretion system ATPase, FliI/YscN {ECO:0000313|EMBL:CBL11609.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBL11609.1};; EC=3.6.3.15 {ECO:0000313|EMBL:CBL11609.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Type III secretion system ATPase, FliI/YscN n=2 Tax=Roseburia RepID=D4KW69_9FIRM
L3_068_368G1_scaffold_216_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20446..20898
DNA (453bp) protein (151aa)
Flagellar export protein FliJ n=4 Tax=Roseburia RepID=D4KQG6_9FIRM
flagellar export protein FliJ
Flagellar export protein FliJ {ECO:0000313|EMBL:CDA57740.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_216_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20925..21758
DNA (834bp) protein (278aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GBV7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09119.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_216_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21806..23287
DNA (1482bp) protein (494aa)
Flagellar hook-length control protein n=2 Tax=Roseburia intestinalis RepID=D4KQG8_9FIRM
Flagellar hook-length control protein
Flagellar hook-length control protein {ECO:0000313|EMBL:CBL09120.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_216_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23309..24040
DNA (732bp) protein (244aa)
Flagellar hook capping protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BX17_9FIRM
Flagellar hook capping protein {ECO:0000313|EMBL:CDA57737.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Flagellar hook capping protein
L3_068_368G1_scaffold_216_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24066..24461
DNA (396bp) protein (132aa)
Flagellar operon protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KW73_9FIRM
flagellar operon protein
Flagellar operon protein {ECO:0000313|EMBL:CBL11613.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_216_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24542..26263
DNA (1722bp) protein (574aa)
Flagellar basal body and hook protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B3T4_9FIRM
Flagellar basal body and hook protein {ECO:0000313|EMBL:CDA57735.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
fagellar hook-basal body proteins
L3_068_368G1_scaffold_216_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26427..26630
DNA (204bp) protein (68aa)
Uncharacterized protein, possibly involved in motility n=4 Tax=Roseburia RepID=D4KQH3_9FIRM
Uncharacterized protein, possibly involved in motility
Uncharacterized protein, possibly involved in motility {ECO:0000313|EMBL:CBL11615.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_216_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26685..27479
DNA (795bp) protein (265aa)
Transporter, MotA/TolQ/ExbB proton channel family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBV1_9FIRM
Chemotaxis protein PomA {ECO:0000313|EMBL:CDA57733.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Flagellar motor component
L3_068_368G1_scaffold_216_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27479..28282
DNA (804bp) protein (268aa)
OmpA family protein n=2 Tax=Roseburia RepID=C7GBV0_9FIRM
OmpA family protein {ECO:0000313|EMBL:EEV00594.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
chemotaxis protein MotB
L3_068_368G1_scaffold_216_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28299..28826
DNA (528bp) protein (176aa)
Flagellar basal body-associated protein FliL n=2 Tax=Roseburia RepID=C7GBU9_9FIRM
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:CDA57730.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Flagellar basal body-associated protein FliL.
L3_068_368G1_scaffold_216_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28858..29838
DNA (981bp) protein (327aa)
Flagellar motor switch protein FliM n=3 Tax=Roseburia RepID=D4KQH5_9FIRM
flagellar motor switch protein FliM
Flagellar motor switch protein FliM {ECO:0000313|EMBL:CDA57729.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_216_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29840..31018
DNA (1179bp) protein (393aa)
Flagellar motor switch protein FliN n=3 Tax=Roseburia RepID=D4KQH6_9FIRM
flagellar motor switch protein FliN
Flagellar motor switch protein FliN {ECO:0000313|EMBL:CDA57728.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Displaying items 1-30 of 53 in total

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