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L3_068_368G1_scaffold_277

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_277_1
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..198)
DNA (198bp) protein (66aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=4 Tax=Clostridium bolteae RepID=A8RHT7_9CLOT
L3_068_368G1_scaffold_277_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(412..876)
DNA (465bp) protein (155aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9VGJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ18992.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_068_368G1_scaffold_277_3
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1032..1865)
DNA (834bp) protein (278aa)
N-acetylmuramoyl-L-alanine amidase n=10 Tax=Clostridium RepID=N9X0X8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25184.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
cell wall hydrolase SleB
L3_068_368G1_scaffold_277_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2463..4034
DNA (1572bp) protein (524aa)
Solute:sodium symporter (SSS) family transporter n=1 Tax=Clostridium clostridioforme CM201 RepID=N9WPT2_9CLOT
Solute:sodium symporter (SSS) family transporter {ECO:0000313|EMBL:ENZ18994.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Na+/solute symporter
L3_068_368G1_scaffold_277_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4137..4925)
DNA (789bp) protein (263aa)
Electron transport complex, rnfabcdge type, B subunit n=9 Tax=Clostridium RepID=N9WXC4_9CLOT
Electron transport complex, rnfabcdge type, B subunit {ECO:0000313|EMBL:ENZ18995.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
RnfABCDGE type electron transport complex subunit B
L3_068_368G1_scaffold_277_6
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4942..5517)
DNA (576bp) protein (192aa)
Electron transport complex protein rnfA n=10 Tax=Clostridium RepID=G5HVW2_9CLOT
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
RnfABCDGE type electron transport complex subunit A
L3_068_368G1_scaffold_277_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5530..6321)
DNA (792bp) protein (264aa)
Electron transport complex, rnfabcdge type, E subunit n=9 Tax=Clostridium RepID=N9VGJ3_9CLOT
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
RnfABCDGE type electron transport complex subunit E
L3_068_368G1_scaffold_277_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6337..6948)
DNA (612bp) protein (204aa)
Electron transport complex, rnfabcdge type, G subunit n=9 Tax=Clostridium RepID=N9X0X1_9CLOT
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
RnfABCDGE type electron transport complex subunit G
L3_068_368G1_scaffold_277_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6951..7886)
DNA (936bp) protein (312aa)
Electron transport complex, rnfabcdge type, D subunit n=9 Tax=Clostridium RepID=N9WPS7_9CLOT
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
electron transport complex, RnfABCDGE type, D subunit
L3_068_368G1_scaffold_277_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7902..9227)
DNA (1326bp) protein (442aa)
Electron transport complex, rnfabcdge type, C subunit n=8 Tax=Clostridium clostridioforme RepID=N9WXB5_9CLOT
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
RnfABCDGE type electron transport complex subunit C
L3_068_368G1_scaffold_277_11
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9414..11297)
DNA (1884bp) protein (628aa)
ABC transporter ATP-binding protein/permease n=8 Tax=Clostridium clostridioforme RepID=N9VFU1_9CLOT
ABC transporter ATP-binding protein/permease {ECO:0000313|EMBL:ENZ19001.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ABC transporter
L3_068_368G1_scaffold_277_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11294..13033)
DNA (1740bp) protein (580aa)
ABC transporter ATP-binding protein n=8 Tax=Clostridium RepID=N9VGI7_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ67357.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ABC transporter
L3_068_368G1_scaffold_277_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13034..13519)
DNA (486bp) protein (162aa)
MarR family transcriptional regulator n=9 Tax=Clostridium RepID=N9X0W6_9CLOT
MarR family transcriptional regulator {ECO:0000313|EMBL:ENZ67358.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
MarR family transcriptional regulator
L3_068_368G1_scaffold_277_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13796..14116
DNA (321bp) protein (107aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WPS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67359.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L3_068_368G1_scaffold_277_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14257..14880)
DNA (624bp) protein (208aa)
NADPH-dependent FMN reductase n=6 Tax=Clostridium clostridioforme RepID=N9WX98_9CLOT
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ENZ67360.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
NADPH-dependent FMN reductase
L3_068_368G1_scaffold_277_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14884..18036)
DNA (3153bp) protein (1051aa)
SNF2-like protein n=6 Tax=Clostridium clostridioforme RepID=N9VFT4_9CLOT
SNF2-like protein {ECO:0000313|EMBL:ENZ67361.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
SNF2-like protein
L3_068_368G1_scaffold_277_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18124..19911)
DNA (1788bp) protein (596aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=9 Tax=Clostridium RepID=G5HVV1_9CLOT
L3_068_368G1_scaffold_277_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20035..20592)
DNA (558bp) protein (186aa)
Elongation factor P n=10 Tax=Clostridium RepID=G5HVV0_9CLOT
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
translation elongation factor P (EF-P)
L3_068_368G1_scaffold_277_19
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20725..22134)
DNA (1410bp) protein (470aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00228653}; EC=1.1.1.- {ECO:0000256|SAAS:SAAS00275099};; EC=1.1.1.25 {ECO:0000256|SAAS:SAAS00216361};; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate 5-dehydrogenase n=8 Tax=Clostridium RepID=N9WPR9_9CLOT
L3_068_368G1_scaffold_277_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22144..22662)
DNA (519bp) protein (173aa)
HAD phosphatase, family IIIA n=7 Tax=Clostridium RepID=N9WX92_9CLOT
HAD phosphatase, family IIIA {ECO:0000313|EMBL:ENZ67365.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_068_368G1_scaffold_277_21
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22703..23155)
DNA (453bp) protein (151aa)
Transcriptional repressor NrdR n=14 Tax=Clostridium RepID=G5HVU7_9CLOT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
ATP-cone domain-containing protein
L3_068_368G1_scaffold_277_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23338..24096
DNA (759bp) protein (253aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214, ECO:0000256|SAAS:SAAS00219718};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=6 Tax=Clostridium clostridioforme RepID=N9VGH6_9CLOT
L3_068_368G1_scaffold_277_23
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24307..24567)
DNA (261bp) protein (87aa)
YlmC/YmxH family sporulation protein n=17 Tax=Clostridium RepID=N9X0V5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX98076.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
YlmC/YmxH family sporulation protein
L3_068_368G1_scaffold_277_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24672..25526)
DNA (855bp) protein (285aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9WPR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67369.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_368G1_scaffold_277_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25725..26633)
DNA (909bp) protein (303aa)
Lipoprotein n=9 Tax=Clostridium RepID=G5HVU3_9CLOT
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
NLPA lipoprotein
L3_068_368G1_scaffold_277_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26812..27477)
DNA (666bp) protein (222aa)
D-methionine ABC transporter permease n=10 Tax=Clostridium RepID=N9VFS2_9CLOT
D-methionine ABC transporter permease {ECO:0000313|EMBL:ENZ19016.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
binding-protein-dependent transport system inner membrane protein
L3_068_368G1_scaffold_277_27
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27479..28546)
DNA (1068bp) protein (356aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
D-methionine ABC transporter ATP-binding protein n=4 Tax=Clostridium RepID=N9ZRM5_9CLOT
ABC transporter
L3_068_368G1_scaffold_277_28
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28714..28806)
DNA (93bp) protein (31aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9X0U9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25158.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L3_068_368G1_scaffold_277_29
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28934..30337)
DNA (1404bp) protein (468aa)
Succinyl-diaminopimelate desuccinylase n=9 Tax=Clostridium RepID=N9WPQ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25157.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
dipeptidase
L3_068_368G1_scaffold_277_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30467..30913)
DNA (447bp) protein (149aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WX77_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67375.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
Displaying items 1-30 of 40 in total

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