ggKbase home page

L3_068_368G1_scaffold_300

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_300_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..615)
DNA (615bp) protein (205aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9ZBL0_9CLOT
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
L3_068_368G1_scaffold_300_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(612..1049)
DNA (438bp) protein (146aa)
FeS cluster assembly scaffold protein NifU n=10 Tax=Clostridium RepID=G5I6V3_9CLOT
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:ENZ17863.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
FeS cluster assembly scaffold protein NifU, Clostridium type
L3_068_368G1_scaffold_300_3
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1107..2300)
DNA (1194bp) protein (398aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Cysteine desulfurase NifS n=8 Tax=Clostridium clostridioforme RepID=G5I6V2_9CLOT
cysteine desulfurase NifS
L3_068_368G1_scaffold_300_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2772..5636)
DNA (2865bp) protein (955aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
beta-galactosidase (EC:3.2.1.23)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9WJK9_9CLOT
L3_068_368G1_scaffold_300_5
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5667..6500)
DNA (834bp) protein (278aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9W7Z6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26047.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
binding-protein-dependent transport system inner membrane protein
L3_068_368G1_scaffold_300_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6503..7396)
DNA (894bp) protein (298aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WJ42_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ17858.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
binding-protein-dependent transport system inner membrane protein
L3_068_368G1_scaffold_300_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7537..8928)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9UZJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ17857.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
extracellular solute-binding protein
L3_068_368G1_scaffold_300_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9076..10575)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9UZ06_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ59222.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
AraC family transcriptional regulator
L3_068_368G1_scaffold_300_9
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10620..12413)
DNA (1794bp) protein (598aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=N9WJL6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26051.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
integral membrane sensor signal transduction histidine kinase
L3_068_368G1_scaffold_300_10
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12703..14262
DNA (1560bp) protein (520aa)
Stage V sporulation protein B n=9 Tax=Clostridium RepID=N9W805_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26052.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
polysaccharide biosynthesis protein
L3_068_368G1_scaffold_300_11
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14315..15040)
DNA (726bp) protein (242aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WJ48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26053.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
transcriptional regulator, GntR family
L3_068_368G1_scaffold_300_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15125..15811)
DNA (687bp) protein (229aa)
Nicotinamide mononucleotide transporter PnuC n=9 Tax=Clostridium RepID=N9UZK0_9CLOT
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:ENZ17852.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
nicotinamide riboside transporter pnuC
L3_068_368G1_scaffold_300_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15838..16770)
DNA (933bp) protein (311aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9UZ12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ59217.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L3_068_368G1_scaffold_300_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16767..17762)
DNA (996bp) protein (332aa)
ADP-ribosylglycohydrolase n=7 Tax=Clostridium clostridioforme RepID=N9WJM0_9CLOT
ADP-ribosylglycohydrolase {ECO:0000313|EMBL:ENZ59216.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
draG; ADP-ribosylglycohydrolase
L3_068_368G1_scaffold_300_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18091..19470
DNA (1380bp) protein (460aa)
MATE efflux family protein n=9 Tax=Clostridium RepID=N9W811_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ENZ59215.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
MATE efflux family protein
L3_068_368G1_scaffold_300_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19660..20511)
DNA (852bp) protein (284aa)
Uncharacterized protein n=7 Tax=Clostridium clostridioforme RepID=N9WJ56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ59214.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
sugar phosphate isomerase/epimerase
L3_068_368G1_scaffold_300_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20593..21825)
DNA (1233bp) protein (411aa)
Glutamate synthase (NADPH/NADH), small subunit n=7 Tax=Clostridium clostridioforme RepID=N9UZK7_9CLOT
Glutamate synthase (NADPH/NADH), small subunit {ECO:0000313|EMBL:ENZ59213.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
oxidoreductase
L3_068_368G1_scaffold_300_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22145..22717)
DNA (573bp) protein (191aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9UZ19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ17846.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_068_368G1_scaffold_300_19
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23148..24173)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WJM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26061.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
metallo-beta-lactamase family protein
L3_068_368G1_scaffold_300_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24238..24780)
DNA (543bp) protein (181aa)
Phospholipid phosphatase n=8 Tax=Clostridium RepID=N9W816_9CLOT
Phospholipid phosphatase {ECO:0000313|EMBL:ENZ59210.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
phosphoesterase PA-phosphatase-like protein
L3_068_368G1_scaffold_300_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24988..26010
DNA (1023bp) protein (341aa)
PTS system EIIc component n=9 Tax=Clostridium RepID=N9WJ61_9CLOT
PTS system EIIc component {ECO:0000313|EMBL:ENZ17843.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
PTS system transporter subunit IIC
L3_068_368G1_scaffold_300_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26094..26849)
DNA (756bp) protein (252aa)
Polyferredoxin n=9 Tax=Clostridium RepID=N9UZL2_9CLOT
Polyferredoxin {ECO:0000313|EMBL:ENZ17842.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
putative polyferredoxin
L3_068_368G1_scaffold_300_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27042..27788)
DNA (747bp) protein (249aa)
Hydroxymethylpyrimidine ABC transporter ATP-binding protein n=9 Tax=Clostridium RepID=N9UZ26_9CLOT
Hydroxymethylpyrimidine ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ17841.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ABC transporter
L3_068_368G1_scaffold_300_24
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27824..28909)
DNA (1086bp) protein (362aa)
Hydroxymethylpyrimidine ABC transporter substrate-binding protein n=8 Tax=Clostridium RepID=N9WJN5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26066.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
NMT1/THI5-like domain-containing protein
L3_068_368G1_scaffold_300_25
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28954..29727)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PNW0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF26067.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
binding-protein-dependent transport system inner membrane protein
L3_068_368G1_scaffold_300_26
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29696..29992)
DNA (297bp) protein (99aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9WJ68_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60985.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L3_068_368G1_scaffold_300_27
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30456..30677)
DNA (222bp) protein (74aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9UZL8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60986.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
fibronectin type III domain-containing protein
L3_068_368G1_scaffold_300_28
unknown

Not on your lists

comp(30874..31146)
DNA (273bp) protein (91aa)

This feature has no annotations

L3_068_368G1_scaffold_300_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31174..31770)
DNA (597bp) protein (199aa)
tag; DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase I n=10 Tax=Clostridium RepID=N9UZ32_9CLOT
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:ENZ17836.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_068_368G1_scaffold_300_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31839..32852)
DNA (1014bp) protein (338aa)
NAD-dependent epimerase/dehydratase n=10 Tax=Clostridium RepID=N9WJP1_9CLOT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ENZ17835.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
mRNA-binding protein
Displaying items 1-30 of 38 in total

View Taxonomy