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L3_068_368G1_scaffold_304

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_304_1
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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439..1737
DNA (1299bp) protein (433aa)
Alpha-ketoglutarate permease n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU44_CITRI
Alpha-ketoglutarate transporter {ECO:0000313|EMBL:AKE59631.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
kgtP; alpha-ketoglutarate permease
L3_068_368G1_scaffold_304_2
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1734..2006)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Escherichia fergusonii B253 RepID=E9Z914_ESCFE
Uncharacterized protein {ECO:0000313|EMBL:GAL47522.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_304_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2102..3457)
DNA (1356bp) protein (452aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000850}; EC=2.7.8.8 {ECO:0000256|PIRNR:PIRNR000850};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AD02_CITK8
pssA; phosphatidylserine synthase
L3_068_368G1_scaffold_304_4
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3571..6231)
DNA (2661bp) protein (887aa)
Putative acyl-CoA synthetase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU40_CITRI
Uncharacterized protein {ECO:0000313|EMBL:GAL47524.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
acyl-CoA synthetase
L3_068_368G1_scaffold_304_5
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6267..6965)
DNA (699bp) protein (233aa)
DTW domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HGN0_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:GAL47525.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_304_6
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7034..7453)
DNA (420bp) protein (140aa)
trxC; thioredoxin (EC:1.8.1.8)
Thioredoxin 2 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU38_CITRI
Thioredoxin 2 {ECO:0000313|EMBL:GAL47526.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_304_7
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7660..8697
DNA (1038bp) protein (346aa)
Putative RNA methyltransferase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU37_CITRI
Putative tRNA/rRNA methyltransferase YfiF {ECO:0000313|EMBL:GAL47527.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
RNA methyltransferase
L3_068_368G1_scaffold_304_8
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8732..9421)
DNA (690bp) protein (230aa)
Uracil-DNA glycosylase {ECO:0000313|EMBL:AKE61948.1}; EC=3.2.2.- {ECO:0000313|EMBL:AKE61948.1};; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Shigella flexneri 1235-66 RepID=I6HGN3_SHIFL
L3_068_368G1_scaffold_304_9
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9739..10122
DNA (384bp) protein (128aa)
Autonomous glycyl radical cofactor n=563 Tax=Salmonella RepID=GRCA_SALA4
Autonomous glycyl radical cofactor GrcA {ECO:0000313|EMBL:AKE59624.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
yfiD; conserved hypothetical protein
L3_068_368G1_scaffold_304_10
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10167..11501)
DNA (1335bp) protein (445aa)
ATP-dependent RNA helicase SrmB n=1 Tax=Salmonella bongori N268-08 RepID=S5MT35_SALBN
ATP-dependent RNA helicase SrmB {ECO:0000313|EMBL:AKE59623.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
RNA helicase
L3_068_368G1_scaffold_304_11
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11633..12370
DNA (738bp) protein (246aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
tRNA1(Val) (adenine(37)-N6)-methyltransferase n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SMS3_CITFR
tRNA (adenine-N6)-methyltransferase
L3_068_368G1_scaffold_304_12
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12355..13977)
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L-aspartate oxidase (EC:1.4.3.16)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AD11_CITK8
L3_068_368G1_scaffold_304_13
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14375..14530
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Salmonella typhimurium (strain 14028s / SGSC 2262) RepID=D0ZSZ0_SALT1
Uncharacterized protein {ECO:0000313|EMBL:KDF07774.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_068_368G1_scaffold_304_14
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14527..15102
DNA (576bp) protein (192aa)
ECF RNA polymerase sigma-E factor n=568 Tax=Enterobacteriaceae RepID=RPOE_SALT1
RNA polymerase sigma factor RpoE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=941190 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Chester str. ATCC 11997.;"
L3_068_368G1_scaffold_304_15
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15134..15784
DNA (651bp) protein (217aa)
Sigma-E factor negative regulatory protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4B6I5_9ENTR
Anti-sigma-E factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Regulator of SigE {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E anti-sigma factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E factor negative regulatory protein {ECO:0000256|PIRNR:PIRNR016938}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
anti-RNA polymerase sigma factor SigE
L3_068_368G1_scaffold_304_16
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15784..16740
DNA (957bp) protein (319aa)
Sigma-E factor regulatory protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU29_CITRI
Sigma-E factor negative regulatory protein RseB {ECO:0000313|EMBL:GAL47535.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
rseB; sigma-E factor regulatory protein
L3_068_368G1_scaffold_304_17
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16737..17216
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AD15_CITK8
Sigma-E factor negative regulatory protein RseC {ECO:0000313|EMBL:GAL47536.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
SoxR reducing system protein RseC
L3_068_368G1_scaffold_304_18
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17499..19298
DNA (1800bp) protein (600aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Elongation factor 4 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4B6I8_9ENTR
elongation factor 4
L3_068_368G1_scaffold_304_19
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19315..20289
DNA (975bp) protein (325aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Signal peptidase I n=2 Tax=Citrobacter RepID=C1M8I1_9ENTR
signal peptidase I
L3_068_368G1_scaffold_304_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20563..21243
DNA (681bp) protein (227aa)
Ribonuclease III {ECO:0000313|EMBL:AKE59614.1}; EC=3.1.26.3 {ECO:0000313|EMBL:AKE59614.1};; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
rnc; Ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU24_CITRI
L3_068_368G1_scaffold_304_21
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21240..22142
DNA (903bp) protein (301aa)
GTPase Era n=10 Tax=Citrobacter RepID=C1M8H9_9ENTR
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
GTP-binding protein Era
L3_068_368G1_scaffold_304_22
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22277..22987
DNA (711bp) protein (237aa)
DNA repair protein RecO n=1 Tax=Enterobacter sp. R4-368 RepID=R9VJL3_9ENTR
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
recO; DNA repair protein RecO
L3_068_368G1_scaffold_304_23
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23004..23735
DNA (732bp) protein (244aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Pyridoxine 5'-phosphate synthase n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AD20_CITK8
pyridoxine 5'-phosphate synthase
L3_068_368G1_scaffold_304_24
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23735..24115
DNA (381bp) protein (127aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=7 Tax=Citrobacter RepID=C1M8H6_9ENTR
L3_068_368G1_scaffold_304_25
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24112..24372)
DNA (261bp) protein (87aa)
Uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C1M8H5_9ENTR
Ferredoxin {ECO:0000313|EMBL:KEY50314.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
ferredoxin
L3_068_368G1_scaffold_304_26
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(24428..25276)
DNA (849bp) protein (283aa)
Transcriptional family protein n=5 Tax=Citrobacter RepID=J0VWS5_9ENTR
Putative RpiR family transcriptional regulator YfhH {ECO:0000313|EMBL:GAL47545.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
transcriptional regulator
L3_068_368G1_scaffold_304_27
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25393..26295
DNA (903bp) protein (301aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
murQ; N-acetylmuramic acid 6-phosphate etherase (EC:4.2.-.-)
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU17_CITRI
L3_068_368G1_scaffold_304_28
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26298..27209
DNA (912bp) protein (304aa)
murP; N-acetylmuramic acid-specific PTS system EIIBC component (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE30 RepID=R8UPU8_9ENTR
N-acetylmuramic acid-specific phosphotransferase system enzyme IIBC component {ECO:0000313|EMBL:GAL47547.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_304_29
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27167..27661
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE32 RepID=R8V7V9_9ENTR
N-acetylmuramic acid-specific phosphotransferase system enzyme IIBC component {ECO:0000313|EMBL:GAL47547.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
PTS sugar transporter subunit IIC
L3_068_368G1_scaffold_304_30
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27665..28300
DNA (636bp) protein (212aa)
Putative membrane protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TU15_CITRI
Uncharacterized protein {ECO:0000313|EMBL:GAL47548.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
Displaying items 1-30 of 39 in total

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