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L3_068_368G1_scaffold_321

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_321_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..183
DNA (183bp) protein (61aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6APG0_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL09077.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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180..1049
DNA (870bp) protein (290aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=2 Tax=Roseburia RepID=R6BKU2_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53942.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_068_368G1_scaffold_321_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1206..1421
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GDY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00011.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_068_368G1_scaffold_321_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1658..5557
DNA (3900bp) protein (1300aa)
Cation/multidrug efflux pump n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYI2_9FIRM
Cation/multidrug efflux pump {ECO:0000313|EMBL:CDA53934.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Cation/multidrug efflux pump
L3_068_368G1_scaffold_321_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5981..8644
DNA (2664bp) protein (888aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Valine--tRNA ligase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUQ7_9FIRM
L3_068_368G1_scaffold_321_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8787..8894
DNA (108bp) protein (36aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSG3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09815.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8985..10361
DNA (1377bp) protein (459aa)
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain n=3 Tax=Roseburia RepID=D4KUQ8_9FIRM
Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain
Predicted polymerase most proteins contain PALM domain HD hydrolase domain and Zn-ribbon domain {ECO:0000313|EMBL:CDA53932.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_321_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10540..10683
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7GDX8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11099.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10732..12096
DNA (1365bp) protein (455aa)
Tetratricopeptide repeat n=2 Tax=Roseburia intestinalis RepID=D4KSG6_9FIRM
Tetratricopeptide repeat.
Tetratricopeptide repeat {ECO:0000313|EMBL:CBL11100.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12233..12544
DNA (312bp) protein (104aa)
Anti-sigma factor antagonist n=2 Tax=Roseburia intestinalis RepID=D4KSG7_9FIRM
anti-anti-sigma factor
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12729..13178
DNA (450bp) protein (150aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=4 Tax=Roseburia RepID=D4KUR3_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CDA53928.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_321_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13180..13926
DNA (747bp) protein (249aa)
RNA polymerase sigma factor n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUR4_9FIRM
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14075..14839
DNA (765bp) protein (255aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUR6_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL11106.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14899..15933
DNA (1035bp) protein (345aa)
HD-GYP domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYH4_9FIRM
HD-GYP domain {ECO:0000313|EMBL:CDA53924.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
HD-GYP domain
L3_068_368G1_scaffold_321_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15942..17030
DNA (1089bp) protein (363aa)
HD-GYP domain n=3 Tax=Roseburia RepID=D4KSH2_9FIRM
HD-GYP domain
HD-GYP domain {ECO:0000313|EMBL:CDA53923.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_321_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17027..17701)
DNA (675bp) protein (225aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW9_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EEU99995.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L3_068_368G1_scaffold_321_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17897..18607
DNA (711bp) protein (237aa)
4Fe-4S binding domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSH4_9FIRM
4Fe-4S binding domain.
4Fe-4S binding domain {ECO:0000313|EMBL:CBL09826.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18636..20216
DNA (1581bp) protein (527aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW7_9FIRM
L3_068_368G1_scaffold_321_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20437..21771
DNA (1335bp) protein (445aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSH6_9FIRM
diguanylate cyclase (GGDEF) domain
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL09828.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22047..23543
DNA (1497bp) protein (499aa)
Beta-xylosidase n=2 Tax=Roseburia intestinalis RepID=D4KUS1_9FIRM
Beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:CBL11111.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23671..24237
DNA (567bp) protein (189aa)
Looped-hinge helix DNA binding domain, AbrB family n=3 Tax=Roseburia RepID=D4KUT0_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDA56619.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
looped-hinge helix DNA binding domain, AbrB family
L3_068_368G1_scaffold_321_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24285..24851
DNA (567bp) protein (189aa)
Acyltransferase family n=2 Tax=Roseburia RepID=D4KKJ4_9FIRM
Acyltransferase family.
Acyltransferase family {ECO:0000313|EMBL:CBL07396.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24859..25287
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99988.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_068_368G1_scaffold_321_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25541..25987
DNA (447bp) protein (149aa)
Heat shock protein Hsp20 n=4 Tax=Roseburia RepID=D4KKJ6_9FIRM
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:CBL11122.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_321_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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26214..26888
DNA (675bp) protein (225aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKJ7_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL07399.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26892..27227
DNA (336bp) protein (112aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Signal transduction histidine kinase n=2 Tax=Roseburia intestinalis RepID=D4KKJ8_9FIRM
Signal transduction histidine kinase
L3_068_368G1_scaffold_321_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27236..28288
DNA (1053bp) protein (351aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Signal transduction histidine kinase n=2 Tax=Roseburia intestinalis RepID=D4KKJ8_9FIRM
Signal transduction histidine kinase
L3_068_368G1_scaffold_321_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28431..29150
DNA (720bp) protein (240aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KKJ9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07401.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_321_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29308..31704
DNA (2397bp) protein (799aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Glycosyl hydrolase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AXI5_9FIRM
Glycosyl hydrolase {ECO:0000313|EMBL:CDA56593.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_068_368G1_scaffold_321_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31900..32610
DNA (711bp) protein (237aa)
Response regulator of the LytR/AlgR family n=2 Tax=Roseburia intestinalis RepID=D4KKK1_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBL07403.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 36 in total

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