ggKbase home page

L3_068_368G1_scaffold_376

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_376_1
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..260)
DNA (258bp) protein (86aa)
Flagellar assembly protein H n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1KG48_CITAM
Flagellar assembly protein FliH {ECO:0000313|EMBL:GAL48103.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fliH; flagellar assembly protein H
L3_068_368G1_scaffold_376_2
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..1251)
DNA (999bp) protein (333aa)
Flagellar motor switch protein FliG n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K474_CITAM
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
fliG; flagellar motor switch protein
L3_068_368G1_scaffold_376_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1244..2947)
DNA (1704bp) protein (568aa)
Flagellar M-ring protein n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K0C3_CITAM
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fliF; flagellar M-ring protein
L3_068_368G1_scaffold_376_4
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3164..3478
DNA (315bp) protein (105aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1JFS8_CITAM
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fliE; flagellar hook-basal body protein FliE
L3_068_368G1_scaffold_376_5
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3782..4243
DNA (462bp) protein (154aa)
Uncharacterized protein n=15 Tax=Salmonella enterica I RepID=V5KQG8_SALTH
hypothetical protein
Putative phage membrane protein {ECO:0000313|EMBL:ESJ01995.1}; TaxID=1173798 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960.;"
L3_068_368G1_scaffold_376_6
Escherichia vulneris, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4243..4557
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Salmonella enterica I RepID=V7S6R0_SALTM
Uncharacterized protein {ECO:0000313|EMBL:GAL58874.1}; TaxID=1115515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia vulneris NBRC 102420.;"
hypothetical protein
L3_068_368G1_scaffold_376_7
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4744..4977)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1KG53_CITAM
Uncharacterized protein {ECO:0000313|EMBL:GAL48107.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_376_8
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4974..6179)
DNA (1206bp) protein (402aa)
Putative inner membrane protein n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K480_CITAM
Uncharacterized protein {ECO:0000313|EMBL:GAL48108.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
putative inner membrane protein
L3_068_368G1_scaffold_376_9
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6365..6778
DNA (414bp) protein (138aa)
Putative lipoprotein n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K0C5_CITAM
Uncharacterized protein {ECO:0000313|EMBL:KDF06416.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
lipoprotein
L3_068_368G1_scaffold_376_10
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..8304)
DNA (1488bp) protein (496aa)
amyA; alpha-amylase (EC:3.2.1.1)
Cytoplasmic alpha-amylase n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1JFT3_CITAM
Alpha-amylase {ECO:0000313|EMBL:GAL48110.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_376_11
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8373..8741)
DNA (369bp) protein (123aa)
Flagellar biosynthesis protein FliT n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K5L2_CITAM
Uncharacterized protein {ECO:0000313|EMBL:AGE94148.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
flagellar biosynthesis protein FliT
L3_068_368G1_scaffold_376_12
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8741..9148)
DNA (408bp) protein (136aa)
Flagellar protein FliS n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1KG57_CITAM
Flagellar protein FliS {ECO:0000313|EMBL:AGE94149.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
fliS; flagellar protein FliS
L3_068_368G1_scaffold_376_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9159..10577)
DNA (1419bp) protein (473aa)
Flagellar capping protein n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K485_CITAM
Flagellar cap protein FliD {ECO:0000313|EMBL:AGE94150.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
fliD; Flagellar cap protein
L3_068_368G1_scaffold_376_14
Yersinia ruckeri, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10887..12164
DNA (1278bp) protein (426aa)
Flagellin n=1 Tax=Yersinia ruckeri RepID=R4NIZ0_YERRU
Flagellin {ECO:0000313|EMBL:KGX79999.1}; TaxID=29486 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia ruckeri.;"
flaA; flagellin
L3_068_368G1_scaffold_376_15
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12327..13046
DNA (720bp) protein (240aa)
RNA polymerase sigma factor FliA n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1JFT7_CITAM
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fliA; flagellar-specific Sigma F (Sigma 28) factor
L3_068_368G1_scaffold_376_16
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13106..13657
DNA (552bp) protein (184aa)
Flagella biosynthesis protein FliZ n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K5L8_CITAM
Sigma-S factor regulatory protein FliZ {ECO:0000313|EMBL:GAL48116.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fliZ; protein fliZ
L3_068_368G1_scaffold_376_17
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13745..14545
DNA (801bp) protein (267aa)
Cystine transporter subunit n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1KG62_CITAM
Cystine ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAL48117.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
fliY; cystine-binding periplasmic protein
L3_068_368G1_scaffold_376_18
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14652..15638
DNA (987bp) protein (329aa)
D-cysteine desulfhydrase {ECO:0000256|HAMAP-Rule:MF_01045}; EC=4.4.1.15 {ECO:0000256|HAMAP-Rule:MF_01045};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
D-cysteine desulfhydrase n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K489_CITAM
D-cysteine desulfhydrase
L3_068_368G1_scaffold_376_19
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15654..16322
DNA (669bp) protein (223aa)
Putative transporter subunit n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K0D3_CITAM
Inner membrane amino-acid ABC transporter permease yecS {ECO:0000313|EMBL:KDF06426.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
cystine ABC transporter permease
L3_068_368G1_scaffold_376_20
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16319..17071
DNA (753bp) protein (251aa)
Putative amino-acid ABC transporter ATP-binding protein YecC n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1JFU2_CITAM
Putative cystine ABC transporter ATP-binding protein YecC {ECO:0000313|EMBL:GAL48120.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
yecC; putative amino-acid ABC transporter ATP-binding protein YecC
L3_068_368G1_scaffold_376_21
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17307..18029
DNA (723bp) protein (241aa)
DNA-binding transcriptional activator SdiA n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K5M3_CITAM
Transcriptional regulator SdiA {ECO:0000313|EMBL:GAL48121.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
LuxR family transcriptional regulator
L3_068_368G1_scaffold_376_22
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18097..18321)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1KG67_CITAM
Uncharacterized protein {ECO:0000313|EMBL:AGE94159.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
hypothetical protein
L3_068_368G1_scaffold_376_23
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18782..19438
DNA (657bp) protein (219aa)
Response regulator n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K0D9_CITAM
Response regulator {ECO:0000313|EMBL:AGE94161.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
uvrY; response regulator
L3_068_368G1_scaffold_376_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19435..21267
DNA (1833bp) protein (611aa)
UvrABC system protein C n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1JFU7_CITAM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
uvrC; UvrABC system protein C
L3_068_368G1_scaffold_376_25
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21324..21872
DNA (549bp) protein (183aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000256|HAMAP-Rule:MF_01437}; EC=2.7.8.5 {ECO:0000256|HAMAP-Rule:MF_01437};; Phosphatidylglycerophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01437}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Citrobacter amalonaticus Y19 RepID=M1K5M9_CITAM
phosphatidylglycerophosphate synthetase
L3_068_368G1_scaffold_376_26
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22753..22881)
DNA (129bp) protein (43aa)
Putative phage integrase {ECO:0000313|EMBL:GAL48127.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_376_27
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23060..23422
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Enterobacter RepID=V3NEF9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:GAL48128.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_376_28
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23424..23858
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Enterobacter cloacae UCICRE 5 RepID=V3H3K0_ENTCL
Uncharacterized protein {ECO:0000313|EMBL:GAL48129.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_376_29
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24111..24257)
DNA (147bp) protein (49aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL48130.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
L3_068_368G1_scaffold_376_30
unknown

Not on your lists

24787..25005
DNA (219bp) protein (73aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

View Taxonomy