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L3_068_368G1_scaffold_390

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_390_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..316)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JUA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49505.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_068_368G1_scaffold_390_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(991..1605)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23030.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNA polymerase, sigma 30 subunit, SigH
L3_068_368G1_scaffold_390_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1622..2374)
DNA (753bp) protein (251aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=2 Tax=Clostridium RepID=B6FJF8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23031.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_390_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2384..2833)
DNA (450bp) protein (150aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Mini-ribonuclease 3 n=2 Tax=Clostridium RepID=B6FJF9_9CLOT
hypothetical protein
L3_068_368G1_scaffold_390_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2818..4245)
DNA (1428bp) protein (476aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Clostridium RepID=B6FJG0_9CLOT
L3_068_368G1_scaffold_390_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4211..4918)
DNA (708bp) protein (236aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=2 Tax=Clostridium RepID=B6FJG1_9CLOT
L3_068_368G1_scaffold_390_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5275..6369)
DNA (1095bp) protein (365aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium RepID=B6FJG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23035.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted acetyltransferase involved in intracellular survival and related acetyltransferases
L3_068_368G1_scaffold_390_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6373..6936)
DNA (564bp) protein (188aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Clostridium RepID=B6FJG3_9CLOT
L3_068_368G1_scaffold_390_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7586..8920)
DNA (1335bp) protein (445aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QS67_9CLOT
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_390_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9023..9376)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q233_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24781.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_390_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9369..9734)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24780.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_390_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9830..11734)
DNA (1905bp) protein (635aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PVJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24779.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_390_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11856..11966)
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PKA7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24778.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_390_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12448..13530
DNA (1083bp) protein (361aa)
H(+)-transporting two-sector ATPase (EC:3.6.3.14)
Potassium uptake protein, TrkH family n=2 Tax=Clostridium RepID=B6FJG9_9CLOT
Potassium uptake protein, TrkH family {ECO:0000313|EMBL:EEA83820.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_068_368G1_scaffold_390_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13543..14187
DNA (645bp) protein (215aa)
TrkA N-terminal domain protein n=2 Tax=Clostridium RepID=B6FJH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24772.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
K+ transport systems, NAD-binding component
L3_068_368G1_scaffold_390_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14177..14878)
DNA (702bp) protein (234aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FJH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24771.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_068_368G1_scaffold_390_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14871..16415)
DNA (1545bp) protein (515aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Osmosensitive K+ channel histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FJH2_9CLOT
L3_068_368G1_scaffold_390_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16462..18456)
DNA (1995bp) protein (665aa)
Osmosensitive K+ channel histidine kinase KdpD (EC:2.7.3.-)
Universal stress family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJH3_9CLOT
Universal stress family protein {ECO:0000313|EMBL:EEA83824.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_068_368G1_scaffold_390_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18457..19101)
DNA (645bp) protein (215aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase C chain n=2 Tax=Clostridium RepID=B6FJH4_9CLOT
potassium-transporting ATPase C chain
L3_068_368G1_scaffold_390_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19115..21169)
DNA (2055bp) protein (685aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase B chain n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q1Y1_9CLOT
potassium-transporting ATPase subunit B
L3_068_368G1_scaffold_390_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21197..22924)
DNA (1728bp) protein (576aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Potassium-transporting ATPase A chain n=3 Tax=Clostridium RepID=R6PVD9_9CLOT
kdpA; potassium-transporting ATPase subunit A
L3_068_368G1_scaffold_390_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22930..23049)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24715.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_390_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23012..23206)
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24713.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_390_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23369..24067)
DNA (699bp) protein (233aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FJI0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24711.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
winged helix family two component transcriptional regulator
L3_068_368G1_scaffold_390_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24072..25478)
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMC4_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_068_368G1_scaffold_390_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25593..29348)
DNA (3756bp) protein (1252aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QRY3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24707.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_390_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29438..30136)
DNA (699bp) protein (233aa)
TIGR01906 family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJI5_9CLOT
TIGR01906 family protein {ECO:0000313|EMBL:EEA83797.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
integral membrane protein
L3_068_368G1_scaffold_390_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30236..31120
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24700.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Transcriptional regulator
L3_068_368G1_scaffold_390_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31127..33298)
DNA (2172bp) protein (724aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q1W0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24696.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Rad3-related DNA helicases
Displaying 29 items

View Taxonomy