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L3_068_368G1_scaffold_398

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_398_1
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(42..287)
DNA (246bp) protein (82aa)
Damage-inducible protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TT68_CITRI
DNA-damage-inducible protein I {ECO:0000313|EMBL:GAL48980.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
dinI; damage-inducible protein
L3_068_368G1_scaffold_398_2
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(365..1411)
DNA (1047bp) protein (349aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TT69_CITRI
L3_068_368G1_scaffold_398_3
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1514..2074)
DNA (561bp) protein (187aa)
Lipoprotein n=2 Tax=Salmonella choleraesuis RepID=V1FWG9_SALCE
Uncharacterized protein {ECO:0000313|EMBL:GAL48978.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
lipoprotein
L3_068_368G1_scaffold_398_4
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2209..2856)
DNA (648bp) protein (216aa)
Glutaredoxin 2 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TT71_CITRI
Glutaredoxin 2 {ECO:0000313|EMBL:GAL48977.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
grxB; glutaredoxin 2
L3_068_368G1_scaffold_398_5
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2920..4128)
DNA (1209bp) protein (403aa)
Multidrug resistance protein MdtH n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=MDTH_CITK8
Multidrug resistance protein MdtH {ECO:0000256|HAMAP-Rule:MF_01529, ECO:0000256|SAAS:SAAS00016561}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
multidrug resistance protein MdtH
L3_068_368G1_scaffold_398_6
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4387..4971
DNA (585bp) protein (195aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UVK6_9ENTR
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:AKE58593.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
ribosomal-protein-alanine acetyltransferase
L3_068_368G1_scaffold_398_7
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4981..5628
DNA (648bp) protein (216aa)
UPF0502 protein CIT292_07719 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BB71_9ENTR
UPF0502 protein yceH {ECO:0000256|HAMAP-Rule:MF_01584}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_398_8
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5630..6553
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AI07_CITK8
Virulence factor MviM homolog YceM {ECO:0000313|EMBL:GAL48973.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_398_9
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6663..8198
DNA (1536bp) protein (512aa)
Integral membrane protein MviN n=4 Tax=Escherichia coli RepID=E9XMQ0_ECOLX
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
mviN; virulence factor
L3_068_368G1_scaffold_398_10
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8241..8663)
DNA (423bp) protein (141aa)
Flagella synthesis chaperone protein FlgN n=2 Tax=Salmonella choleraesuis RepID=V1FPJ2_SALCE
Flagellar chaperone protein FlgN {ECO:0000313|EMBL:GAL48971.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgN; flagella synthesis protein FlgN
L3_068_368G1_scaffold_398_11
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8672..8965)
DNA (294bp) protein (98aa)
Negative regulator of flagellin synthesis (Anti-sigma factor) n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TTR2_CITRI
Anti-sigma 28 factor {ECO:0000313|EMBL:GAL48970.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgM; negative regulator of flagellin synthesis (anti-sigma factor)
L3_068_368G1_scaffold_398_12
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9059..9715)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AI00_CITK8
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgA; flagellar basal body P-ring biosynthesis protein FlgA
L3_068_368G1_scaffold_398_13
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9872..10288
DNA (417bp) protein (139aa)
Flagellar basal body rod protein FlgB n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TTR4_CITRI
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
flgB; flagellar basal-body rod protein FlgB
L3_068_368G1_scaffold_398_14
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10292..10696
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AHZ8_CITK8
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgC; flagellar basal body rod protein FlgC
L3_068_368G1_scaffold_398_15
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10708..11406
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AHZ7_CITK8
Flagellar basal body rod modification protein {ECO:0000313|EMBL:GAL48966.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgD; flagellar basal body rod modification protein
L3_068_368G1_scaffold_398_16
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11432..12712
DNA (1281bp) protein (427aa)
Flagellar hook protein FlgE n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CBL9_CITFR
Flagellar hook protein {ECO:0000313|EMBL:GAL48965.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgE; flagellar hook protein FlgE
L3_068_368G1_scaffold_398_17
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12733..13488
DNA (756bp) protein (252aa)
Flagellar basal-body rod protein FlgF n=123 Tax=Escherichia coli RepID=B1LI69_ECOSM
Flagellar basal body rod protein FlgF {ECO:0000313|EMBL:GAL48964.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flagellar basal-body rod protein FlgF
L3_068_368G1_scaffold_398_18
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13502..14284
DNA (783bp) protein (261aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BB59_9ENTR
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:KEY48972.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
flgG; flagellar basal body rod protein FlgG
L3_068_368G1_scaffold_398_19
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14342..15040
DNA (699bp) protein (233aa)
Flagellar L-ring protein n=6 Tax=Enterobacteriaceae RepID=A8AHZ3_CITK8
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
flgH; flagellar basal body L-ring protein
L3_068_368G1_scaffold_398_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15053..16150
DNA (1098bp) protein (366aa)
Flagellar P-ring protein n=3 Tax=Citrobacter RepID=R8VKU6_9ENTR
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
flgI; flagellar basal body P-ring biosynthesis protein FlgA
L3_068_368G1_scaffold_398_21
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16150..17100
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AHZ1_CITK8
Peptidoglycan hydrolase FlgJ {ECO:0000313|EMBL:GAL48960.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgJ; flagellar rod assembly protein/muramidase FlgJ
L3_068_368G1_scaffold_398_22
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17166..18806
DNA (1641bp) protein (547aa)
Flagellar hook-associated protein 1 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TTR5_CITRI
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:GAL48959.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
flgK; flagellar hook-associated protein 1
L3_068_368G1_scaffold_398_23
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18821..19774
DNA (954bp) protein (318aa)
Flagellar hook-associated protein 3 n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TTR6_CITRI
Flagellar hook-associated protein 3 {ECO:0000313|EMBL:KDF05690.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
flgL; flagellar hook-associated protein 3
L3_068_368G1_scaffold_398_24
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19858..21051)
DNA (1194bp) protein (398aa)
Putative Major Facilitator Superfamily transporter n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TTR7_CITRI
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAL48957.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
major Facilitator Superfamily transporter
L3_068_368G1_scaffold_398_25
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21162..22097
DNA (936bp) protein (312aa)
Putative LysR-family transcriptional regulator n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TTR8_CITRI
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAL48956.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
LysR family transcriptional regulator
L3_068_368G1_scaffold_398_26
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22137..25421)
DNA (3285bp) protein (1095aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
rne; ribonuclease E (EC:3.1.4.-)
Ribonuclease E n=2 Tax=Enterobacteriaceae RepID=D2TTR9_CITRI
L3_068_368G1_scaffold_398_27
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25952..26947
DNA (996bp) protein (332aa)
rluC; 23S rRNA pseudouridylate synthase C (EC:4.2.1.70)
Pseudouridine synthase n=4 Tax=Escherichia coli RepID=L2W0G9_ECOLX
23S rRNA pseudouridylate synthase {ECO:0000313|EMBL:AKE58614.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
L3_068_368G1_scaffold_398_28
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27025..27609)
DNA (585bp) protein (195aa)
Maf-like protein CKO_01970 n=1 Tax=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) RepID=A8AHY4_CITK8
Maf-like protein yceF {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
Maf-like protein
L3_068_368G1_scaffold_398_29
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27807..28328
DNA (522bp) protein (174aa)
Uncharacterized protein n=10 Tax=Enterobacteriaceae RepID=I6H029_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:GAL48952.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter farmeri GTC 1319.;"
hypothetical protein
L3_068_368G1_scaffold_398_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28345..28518
DNA (174bp) protein (58aa)
50S ribosomal protein L32 n=1787 Tax=Enterobacteriaceae RepID=RL32_ECO27
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
Displaying items 1-30 of 34 in total

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