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L3_068_368G1_scaffold_406

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_406_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(69..221)
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7G6Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54458.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_068_368G1_scaffold_406_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(414..1934)
DNA (1521bp) protein (507aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases {ECO:0000313|EMBL:CBL12699.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CBL12699.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA9_9FIRM
L3_068_368G1_scaffold_406_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1950..2579)
DNA (630bp) protein (210aa)
Zn-dependent hydrolases, including glyoxylases n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA8_9FIRM
Zn-dependent hydrolases, including glyoxylases
Zn-dependent hydrolases, including glyoxylases {ECO:0000313|EMBL:CBL12698.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_406_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2684..5005)
DNA (2322bp) protein (774aa)
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:CBL12697.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CBL12697.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZA7_9FIRM
L3_068_368G1_scaffold_406_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5078..6040)
DNA (963bp) protein (321aa)
Acetyltransferase, GNAT family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G703_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEV02368.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Acetyltransferases, including N-acetylases of ribosomal proteins
L3_068_368G1_scaffold_406_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6065..8308)
DNA (2244bp) protein (748aa)
Fibronectin type III domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMN0_9FIRM
Fibronectin type III domain {ECO:0000313|EMBL:CBL08132.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Fibronectin type III domain.
L3_068_368G1_scaffold_406_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8329..9237)
DNA (909bp) protein (303aa)
dihydroorotate dehydrogenase (subfamily 1) family protein (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Dihydroorotate dehydrogenase n=4 Tax=Roseburia RepID=D4KMM9_9FIRM
L3_068_368G1_scaffold_406_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9237..10013)
DNA (777bp) protein (259aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=2 Tax=Roseburia intestinalis RepID=D4KMM8_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_406_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10043..11368)
DNA (1326bp) protein (442aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=2 Tax=Roseburia RepID=C7G707_9FIRM
L3_068_368G1_scaffold_406_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11482..12726)
DNA (1245bp) protein (415aa)
GTPase HflX n=2 Tax=Roseburia RepID=D4KMM6_9FIRM
GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_406_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12753..13931)
DNA (1179bp) protein (393aa)
Tetratricopeptide repeat protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G709_9FIRM
Putative tetratricopeptide repeat-containing domain protein {ECO:0000313|EMBL:CDA54212.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_068_368G1_scaffold_406_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13952..14443)
DNA (492bp) protein (164aa)
Acetyltransferase GNAT family n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AT69_9FIRM
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDA54210.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted acetyltransferase
L3_068_368G1_scaffold_406_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14738..15247
DNA (510bp) protein (170aa)
RNA polymerase sigma factor SigV n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZH5_9FIRM
RNA polymerase sigma factor SigV {ECO:0000313|EMBL:CDA54209.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
RNA polymerase sigma factor, sigma-70 family
L3_068_368G1_scaffold_406_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15244..16152
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMM3_9FIRM
Protein of unknown function (DUF3298).
Uncharacterized protein {ECO:0000313|EMBL:CBL08125.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_406_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16182..17534
DNA (1353bp) protein (451aa)
Predicted membrane protein involved in D-alanine export n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZ96_9FIRM
Predicted membrane protein involved in D-alanine export
Predicted membrane protein involved in D-alanine export {ECO:0000313|EMBL:CBL12686.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_406_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17547..18386
DNA (840bp) protein (280aa)
GDSL-like Lipase/Acylhydrolase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZ95_9FIRM
GDSL-like Lipase/Acylhydrolase.
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:CBL12685.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_068_368G1_scaffold_406_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18501..19757
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G716_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEV02381.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_068_368G1_scaffold_406_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19895..20437)
DNA (543bp) protein (181aa)
CarD-like protein n=4 Tax=Roseburia RepID=C7G717_9FIRM
CarD-like protein {ECO:0000313|EMBL:EEV02382.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Transcriptional regulators, similar to M. xanthus CarD
L3_068_368G1_scaffold_406_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20689..24474)
DNA (3786bp) protein (1262aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G718_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EEV02383.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bacterial surface proteins containing Ig-like domains
L3_068_368G1_scaffold_406_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24795..25607)
DNA (813bp) protein (271aa)
Site-specific recombinase XerD n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KML7_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBL08119.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_068_368G1_scaffold_406_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25830..26855)
DNA (1026bp) protein (342aa)
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL12678.1}; EC=2.7.1.45 {ECO:0000313|EMBL:CBL12678.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
2-dehydro-3-deoxygluconokinase KdgK n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T0Y5_ROSHA
2-dehydro-3-deoxygluconokinase KdgK
L3_068_368G1_scaffold_406_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27205..28224
DNA (1020bp) protein (340aa)
Sugar kinases, ribokinase family (EC:2.7.1.45)
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL08116.1}; EC=2.7.1.45 {ECO:0000313|EMBL:CBL08116.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Sugar kinases, ribokinase family n=2 Tax=Roseburia intestinalis RepID=D4KML4_9FIRM
L3_068_368G1_scaffold_406_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28371..29381)
DNA (1011bp) protein (337aa)
Zn-dependent dipeptidase, microsomal dipeptidase homolog (EC:3.4.13.19)
Renal dipeptidase family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G723_9FIRM
Renal dipeptidase family protein {ECO:0000313|EMBL:EEV02388.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_068_368G1_scaffold_406_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29409..30731)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G724_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02389.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_068_368G1_scaffold_406_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30679..30876)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G725_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02390.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_068_368G1_scaffold_406_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30821..31162)
DNA (342bp) protein (114aa)
Transcriptional regulator, PadR family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G726_9FIRM
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EEV02391.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
transcriptional regulator, PadR family
Displaying 26 items

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