ggKbase home page

L3_068_368G1_scaffold_413

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_413_1
unknown

Not on your lists

comp(143..757)
DNA (615bp) protein (205aa)

This feature has no annotations

L3_068_368G1_scaffold_413_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(784..1041)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=H1CK11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26441.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_413_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1553..1882)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26407.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
DeoR-like helix-turn-helix domain.
L3_068_368G1_scaffold_413_4
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1883..2266)
DNA (384bp) protein (128aa)
Uncharacterized protein n=10 Tax=Clostridiales RepID=A7VG08_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDO57434.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L3_068_368G1_scaffold_413_5
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2554..3408
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26409.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_413_6
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4109..4354)
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26413.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_413_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4601..4789
DNA (189bp) protein (63aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26414.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
2', 3'-cyclic nucleotide 2'-phosphodiesterase
L3_068_368G1_scaffold_413_8
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5148..5624
DNA (477bp) protein (159aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK22_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHO26415.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
L3_068_368G1_scaffold_413_9
unknown

Not on your lists

comp(5650..6144)
DNA (495bp) protein (165aa)

This feature has no annotations

L3_068_368G1_scaffold_413_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6251..6700
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26213.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_068_368G1_scaffold_413_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6757..6903
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26214.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_068_368G1_scaffold_413_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6974..8572
DNA (1599bp) protein (533aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54379.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
resolvase, n-terminal:recombinase
L3_068_368G1_scaffold_413_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8572..9324
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54380.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
recombinase
L3_068_368G1_scaffold_413_14
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9321..10970
DNA (1650bp) protein (550aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO24932.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
site-specific recombinase, DNA invertase Pin
L3_068_368G1_scaffold_413_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10967..11713
DNA (747bp) protein (249aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54382.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_068_368G1_scaffold_413_16
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11970..12608
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26219.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_068_368G1_scaffold_413_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13292..13750
DNA (459bp) protein (153aa)
low molecular weight protein-tyrosine-phosphatase (EC:3.1.3.48)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26220.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_068_368G1_scaffold_413_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13769..14650
DNA (882bp) protein (294aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54385.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_068_368G1_scaffold_413_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15466..16767)
DNA (1302bp) protein (434aa)
FAD dependent oxidoreductase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D441_9CLOT
FAD dependent oxidoreductase {ECO:0000313|EMBL:ERI76237.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
FAD dependent oxidoreductase
L3_068_368G1_scaffold_413_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16958..17359)
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2D9R1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54889.1}; Flags: Fragment;; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_068_368G1_scaffold_413_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17972..18952)
DNA (981bp) protein (327aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CIK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54861.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_068_368G1_scaffold_413_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19009..20043)
DNA (1035bp) protein (345aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.103 1.1.1.14)
Putative chlorophyll synthesis pathway protein BchC n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BVL7_9CLOT
Putative chlorophyll synthesis pathway protein BchC {ECO:0000313|EMBL:ERI76290.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_068_368G1_scaffold_413_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20056..20478)
DNA (423bp) protein (141aa)
RbsD/FucU transport family protein n=2 Tax=Clostridiales RepID=G9YT07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28598.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
transporter
L3_068_368G1_scaffold_413_24
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20494..21660)
DNA (1167bp) protein (389aa)
Alcohol dehydrogenase, iron-dependent n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BWV3_9CLOT
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:ERI76288.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
iron-containing alcohol dehydrogenase
L3_068_368G1_scaffold_413_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21830..22822)
DNA (993bp) protein (331aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YT04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI76286.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
sugar ABC transporter sugar-binding protein
L3_068_368G1_scaffold_413_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22890..23933)
DNA (1044bp) protein (348aa)
Putative ribose ABC transporter permease protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YT03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54866.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
inner-membrane translocator
L3_068_368G1_scaffold_413_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23930..25444)
DNA (1515bp) protein (505aa)
Putative ribose transport ATP-binding protein rbsa n=2 Tax=Clostridiales RepID=G9YT02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54867.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ABC transporter
L3_068_368G1_scaffold_413_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25441..26418)
DNA (978bp) protein (326aa)
ROK family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YT01_9FIRM
ROK family protein {ECO:0000313|EMBL:EHM44444.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ROK family protein
L3_068_368G1_scaffold_413_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26702..28429)
DNA (1728bp) protein (576aa)
pgm; phosphoglucomutase (EC:5.4.2.2)
Putative phosphoglucomutase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54852.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_068_368G1_scaffold_413_30
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28547..29035)
DNA (489bp) protein (163aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BYP5_9CLOT
hypothetical protein
Displaying items 1-30 of 32 in total

View Taxonomy