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L3_068_368G1_scaffold_424

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_424_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..2259
DNA (2259bp) protein (753aa)
acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE (EC:1.2.1.10 1.1.1.1)
Aldehyde dehydrogenase (NAD) family protein n=3 Tax=Lachnospiraceae RepID=A7B514_RUMGN
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_068_368G1_scaffold_424_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2542..3297
DNA (756bp) protein (252aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B513_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47937.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Phosphotransferase enzyme family.
L3_068_368G1_scaffold_424_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3364..4509)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TW48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67514.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_068_368G1_scaffold_424_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4653..5480
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67513.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
HAD-superfamily hydrolase, subfamily IIB
L3_068_368G1_scaffold_424_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5491..6318
DNA (828bp) protein (276aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=3 Tax=Lachnospiraceae RepID=A7B510_RUMGN
L3_068_368G1_scaffold_424_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6465..7259
DNA (795bp) protein (265aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B509_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47933.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_068_368G1_scaffold_424_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7358..8044
DNA (687bp) protein (229aa)
ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B508_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47932.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Polar amino acid transport system permease
L3_068_368G1_scaffold_424_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8034..8777
DNA (744bp) protein (248aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Arginine ABC transporter, ATP-binding protein ArtM n=4 Tax=Clostridiales RepID=A7B507_RUMGN
Arginine transport ATP-binding protein ArtM {ECO:0000313|EMBL:CCZ67509.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_368G1_scaffold_424_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8865..11567
DNA (2703bp) protein (901aa)
Putative translation elongation factor G n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B506_RUMGN
Putative translation elongation factor G {ECO:0000313|EMBL:EDN77029.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
small GTP-binding protein domain
L3_068_368G1_scaffold_424_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11570..13303
DNA (1734bp) protein (578aa)
A/G-specific adenine glycosylase (EC:3.2.2.-)
Sugar fermentation stimulation protein homolog n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFD0_9FIRM
Sugar fermentation stimulation protein homolog {ECO:0000313|EMBL:CCZ67507.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_368G1_scaffold_424_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13379..13981
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8R1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67506.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Transcriptional regulator
L3_068_368G1_scaffold_424_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13999..14919
DNA (921bp) protein (307aa)
Lipid kinase YegS/Rv2252/BmrU family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPG5_9FIRM
Lipid kinase YegS/Rv2252/BmrU family {ECO:0000313|EMBL:CCZ67505.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L3_068_368G1_scaffold_424_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14935..15744
DNA (810bp) protein (270aa)
Glycerophosphodiester phosphodiesterase family protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B502_RUMGN
Glycerophosphodiester phosphodiesterase family protein {ECO:0000313|EMBL:EDN77025.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Glycerophosphoryl diester phosphodiesterase
L3_068_368G1_scaffold_424_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15871..16551
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TP42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67503.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
PAP2 superfamily.
L3_068_368G1_scaffold_424_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16684..17382
DNA (699bp) protein (233aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFC2_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CCZ67502.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA-binding response regulator
L3_068_368G1_scaffold_424_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17479..18405
DNA (927bp) protein (309aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BVL9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47922.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type multidrug transport system, ATPase component
L3_068_368G1_scaffold_424_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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18399..19199
DNA (801bp) protein (267aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BWM1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47921.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_424_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19258..20187
DNA (930bp) protein (310aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TW36_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_068_368G1_scaffold_424_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20275..21363
DNA (1089bp) protein (363aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=2 Tax=Lachnospiraceae RepID=F7JXC3_9FIRM
Tryptophan-tRNA ligase {ECO:0000313|EMBL:ETD19209.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_068_368G1_scaffold_424_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21412..22455)
DNA (1044bp) protein (348aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Ribonucleotide reductase, beta subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=2 Tax=Lachnospiraceae RepID=F7JXC2_9FIRM
L3_068_368G1_scaffold_424_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22485..24776)
DNA (2292bp) protein (764aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ribonucleoside-diphosphate reductase, alpha subunit (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B4Y7_RUMGN
L3_068_368G1_scaffold_424_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25197..26297
DNA (1101bp) protein (367aa)
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=3 Tax=Lachnospiraceae RepID=A7B4Y6_RUMGN
UDP-galactopyranose mutase {ECO:0000313|EMBL:ETD19206.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_068_368G1_scaffold_424_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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26312..26710
DNA (399bp) protein (133aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TW15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47909.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
GtrA family protein
L3_068_368G1_scaffold_424_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26723..27505
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67493.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_068_368G1_scaffold_424_25
unknown

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27521..27673
DNA (153bp) protein (51aa)

This feature has no annotations

L3_068_368G1_scaffold_424_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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27791..28246
DNA (456bp) protein (152aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B4Y3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77006.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted membrane protein
L3_068_368G1_scaffold_424_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28460..28654
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U8N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67491.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_368G1_scaffold_424_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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28819..29967
DNA (1149bp) protein (383aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TPC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47905.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted N6-adenine-specific DNA methylase
L3_068_368G1_scaffold_424_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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29979..30587
DNA (609bp) protein (203aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TW08_9FIRM
L3_068_368G1_scaffold_424_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30600..30932
DNA (333bp) protein (111aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNZ0_9FIRM
phosphoesterase, MJ0936 family
Displaying 30 items

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