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L3_068_368G1_scaffold_467

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_467_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(571..1698)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80230.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_068_368G1_scaffold_467_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2021..3943
DNA (1923bp) protein (641aa)
Peptidase, C69 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUQ2_9CLOT
Peptidase, C69 family {ECO:0000313|EMBL:EEA80228.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative dipeptidase B
L3_068_368G1_scaffold_467_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4093..4815
DNA (723bp) protein (241aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FUQ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23465.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_467_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4802..6292
DNA (1491bp) protein (497aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23466.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_467_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6261..7661
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QNE5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23467.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type antimicrobial peptide transport system, permease component
L3_068_368G1_scaffold_467_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7720..7983)
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23468.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_467_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8138..9202
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PRU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23469.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted membrane protein, putative toxin regulator
L3_068_368G1_scaffold_467_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9320..10021
DNA (702bp) protein (234aa)
RelA/SpoT domain protein n=2 Tax=Clostridium RepID=B6FUP5_9CLOT
RelA/SpoT domain protein {ECO:0000313|EMBL:EEA80269.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_068_368G1_scaffold_467_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10057..10947)
DNA (891bp) protein (297aa)
LysR substrate binding domain protein n=2 Tax=Clostridium RepID=B6FUP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23471.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_068_368G1_scaffold_467_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11098..11994
DNA (897bp) protein (299aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUP3_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEA80267.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
thioredoxin reductase
L3_068_368G1_scaffold_467_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12006..13037
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80266.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_068_368G1_scaffold_467_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13209..14117
DNA (909bp) protein (303aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PRV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23474.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)
L3_068_368G1_scaffold_467_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14137..15027
DNA (891bp) protein (297aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Clostridium RepID=B6FUP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23475.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)
L3_068_368G1_scaffold_467_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15020..15892
DNA (873bp) protein (291aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23476.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)
L3_068_368G1_scaffold_467_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15879..16628
DNA (750bp) protein (250aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1) (EC:3.6.3.27)
Phosphate ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FUN8_9CLOT
L3_068_368G1_scaffold_467_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16630..17286
DNA (657bp) protein (219aa)
Phosphate-specific transport system accessory protein PhoU n=2 Tax=Clostridium RepID=B6FUN7_9CLOT
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
phosphate uptake regulator, PhoU
L3_068_368G1_scaffold_467_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17311..17991
DNA (681bp) protein (227aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FUN6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23479.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_068_368G1_scaffold_467_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17981..19312
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Signal transduction histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PIW8_9CLOT
L3_068_368G1_scaffold_467_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19331..20266)
DNA (936bp) protein (312aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUN4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23481.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_467_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20244..20783)
DNA (540bp) protein (180aa)
Sigma-70 region 2 n=2 Tax=Clostridium RepID=B6FUN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23482.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ECF subfamily RNA polymerase sigma-24 subunit
L3_068_368G1_scaffold_467_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20950..21108)
DNA (159bp) protein (53aa)
Rubredoxin n=2 Tax=Clostridium RepID=B6FUN2_9CLOT
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
rubredoxin-type Fe(Cys)4 protein
L3_068_368G1_scaffold_467_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21301..22050
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PRW1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23484.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted xylanase/chitin deacetylase
L3_068_368G1_scaffold_467_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22184..23437
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PIX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23485.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glutamine synthetase, type I
L3_068_368G1_scaffold_467_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23481..24029
DNA (549bp) protein (183aa)
ANTAR domain protein n=2 Tax=Clostridium RepID=B6FUM9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23486.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulator with putative antiterminator output domain
L3_068_368G1_scaffold_467_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24049..24882
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=2 Tax=Clostridium RepID=B6FUM8_9CLOT
L3_068_368G1_scaffold_467_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24899..26113
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=2 Tax=Clostridium RepID=B6FUM7_9CLOT
L3_068_368G1_scaffold_467_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26161..26844)
DNA (684bp) protein (228aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Clostridium RepID=B6FUM6_9CLOT
phosphoribosylaminoimidazole-succinocarboxamide synthase
L3_068_368G1_scaffold_467_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26998..27789)
DNA (792bp) protein (264aa)
Transcriptional regulator, MerR family n=2 Tax=Clostridium RepID=B6FUM5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23490.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
regulatory protein MerR
L3_068_368G1_scaffold_467_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27806..28252)
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FUM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23491.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
Displaying 29 items

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