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L3_068_368G1_scaffold_491

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_491_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..354
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQ42_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67800.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_368G1_scaffold_491_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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320..1060
DNA (741bp) protein (247aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B2A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RNA polymerase, sigma 29 subunit, SigE
L3_068_368G1_scaffold_491_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1137..2747
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67798.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L3_068_368G1_scaffold_491_4
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2875..3222
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z3F6_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR71425.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_068_368G1_scaffold_491_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3341..3478
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U9D8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67796.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_368G1_scaffold_491_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3612..4391
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=A7B2A4_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
RNA polymerase, sigma subunit, RpsG/SigG
L3_068_368G1_scaffold_491_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4491..5171
DNA (681bp) protein (227aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD-superfamily hydrolase subfamily IA family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWU2_9FIRM
HAD-superfamily hydrolase subfamily IA family protein {ECO:0000313|EMBL:CCZ67794.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_068_368G1_scaffold_491_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5178..5441
DNA (264bp) protein (88aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2A6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77877.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_068_368G1_scaffold_491_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5420..5908)
DNA (489bp) protein (163aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2A7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49170.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_491_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6054..6632
DNA (579bp) protein (193aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=4 Tax=Clostridiales RepID=A7B2A9_RUMGN
L3_068_368G1_scaffold_491_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6634..9999
DNA (3366bp) protein (1122aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=2 Tax=Lachnospiraceae RepID=F7JUZ6_9FIRM
L3_068_368G1_scaffold_491_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10025..11077
DNA (1053bp) protein (351aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2B1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49167.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PPIC-type PPIASE domain.
L3_068_368G1_scaffold_491_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11132..12763)
DNA (1632bp) protein (544aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BQR3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16836.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted unusual protein kinase
L3_068_368G1_scaffold_491_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12760..13119)
DNA (360bp) protein (120aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2B5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49165.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_491_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13285..14232
DNA (948bp) protein (316aa)
MoxR-like ATPases (EC:3.6.3.-)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2B7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16834.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_068_368G1_scaffold_491_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14244..15278
DNA (1035bp) protein (345aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BNS0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49163.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_491_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15295..17058
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2B9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77890.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_068_368G1_scaffold_491_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17453..18568)
DNA (1116bp) protein (372aa)
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase (EC:2.6.1.9)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2C4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77895.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_068_368G1_scaffold_491_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18695..21985
DNA (3291bp) protein (1097aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BNX5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16829.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_068_368G1_scaffold_491_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22000..23283
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B2C6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77897.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_068_368G1_scaffold_491_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23258..24025
DNA (768bp) protein (256aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2C7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49157.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_491_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24170..24919
DNA (750bp) protein (250aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2C8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49156.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_068_368G1_scaffold_491_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24916..25836
DNA (921bp) protein (307aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=4 Tax=Clostridiales RepID=A7B2C9_RUMGN
L3_068_368G1_scaffold_491_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25833..26231
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BNW9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16824.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4)
L3_068_368G1_scaffold_491_25
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26185..26484
DNA (300bp) protein (100aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NHG6_CLOSV
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EDS06043.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
PTS system fructose subfamily transporter subunit IIC
Displaying 25 items

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