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L3_068_368G1_scaffold_513

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_513_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..984
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCQ5_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR74410.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_068_368G1_scaffold_513_2
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

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1757..2437
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9K9Q0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS43068.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
two-component response regulator
L3_068_368G1_scaffold_513_3
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2434..3423
DNA (990bp) protein (330aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3U2_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EDS74326.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
integral membrane sensor signal transduction histidine kinase
L3_068_368G1_scaffold_513_4
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3525..4283
DNA (759bp) protein (253aa)
polyamine-transporting ATPase (EC:3.6.3.31)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3U3_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS74327.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
L3_068_368G1_scaffold_513_5
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4280..6166
DNA (1887bp) protein (629aa)
Efflux ABC transporter, permease protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3U4_9FIRM
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDS74328.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
ABC transporter permease
L3_068_368G1_scaffold_513_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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6257..7567
DNA (1311bp) protein (437aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM47_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EEA82904.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_068_368G1_scaffold_513_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7600..8025
DNA (426bp) protein (142aa)
Hemerythrin HHE cation binding domain protein n=2 Tax=Clostridium RepID=B6FM48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22551.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hemerythrin-like metal-binding domain
L3_068_368G1_scaffold_513_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8929..9852
DNA (924bp) protein (308aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
3-oxoacyl-[acyl-carrier-protein] synthase III (EC:2.3.1.180 2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=2 Tax=Clostridium RepID=B6FM49_9CLOT
L3_068_368G1_scaffold_513_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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9825..10133
DNA (309bp) protein (103aa)
Acyl carrier protein n=2 Tax=Clostridium RepID=B6FM50_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
acyl carrier protein
L3_068_368G1_scaffold_513_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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10149..11087
DNA (939bp) protein (313aa)
Putative enoyl-[acyl-carrier-protein] reductase II {ECO:0000313|EMBL:EEA82908.1}; EC=1.3.-.- {ECO:0000313|EMBL:EEA82908.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative enoyl-(acyl-carrier-protein) reductase II (EC:1.3.1.-)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PE06_9CLOT
L3_068_368G1_scaffold_513_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11080..12012
DNA (933bp) protein (311aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=2 Tax=Clostridium RepID=B6FM52_9CLOT
L3_068_368G1_scaffold_513_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11994..12734
DNA (741bp) protein (247aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVQ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22546.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_513_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12753..13991
DNA (1239bp) protein (413aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 (EC:2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=2 Tax=Clostridium RepID=B6FM54_9CLOT
L3_068_368G1_scaffold_513_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13957..14421
DNA (465bp) protein (155aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM55_9CLOT
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EEA82912.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein
L3_068_368G1_scaffold_513_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14444..14872
DNA (429bp) protein (143aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ (EC:4.2.1.-)
Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ n=2 Tax=Clostridium RepID=B6FM56_9CLOT
L3_068_368G1_scaffold_513_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14881..16221
DNA (1341bp) protein (447aa)
acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase subunit n=2 Tax=Clostridium RepID=B6FM57_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22542.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_068_368G1_scaffold_513_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16268..17941
DNA (1674bp) protein (558aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|SAAS:SAAS00057375}; EC=6.4.1.- {ECO:0000256|SAAS:SAAS00275530};; EC=6.4.1.2 {ECO:0000256|SAAS:SAAS00057486};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-CoA carboxylase carboxyl transferase beta subunit n=2 Tax=Clostridium RepID=R6PVQ0_9CLOT
L3_068_368G1_scaffold_513_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17961..19022
DNA (1062bp) protein (354aa)
Oxidoreductase, 2-nitropropane dioxygenase family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM60_9CLOT
Oxidoreductase, 2-nitropropane dioxygenase family protein {ECO:0000313|EMBL:EEA82917.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Dioxygenases related to 2-nitropropane dioxygenase
L3_068_368G1_scaffold_513_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19064..19510
DNA (447bp) protein (149aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium RepID=B6FM61_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22539.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, MarR family
L3_068_368G1_scaffold_513_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19577..20137
DNA (561bp) protein (187aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Phosphodiesterase family protein n=2 Tax=Clostridium RepID=B6FM63_9CLOT
phosphodiesterase, MJ0936 family
L3_068_368G1_scaffold_513_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20238..20753
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium RepID=B6FM64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22537.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Transcriptional regulators
L3_068_368G1_scaffold_513_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20746..22479
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PVP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22536.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_368G1_scaffold_513_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22472..24361
DNA (1890bp) protein (630aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FM66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22535.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type multidrug transport system, ATPase and permease components
L3_068_368G1_scaffold_513_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24407..25456
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82878.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
Displaying 24 items

View Taxonomy