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L3_068_368G1_scaffold_518

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_068_368G1_scaffold_518_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..395
DNA (393bp) protein (131aa)
Methylated DNA-protein cysteine methyltransferase n=16 Tax=Bifidobacterium RepID=B3DTS9_BIFLD
ada; ada
Cysteine methyltransferase {ECO:0000313|EMBL:KEY23479.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_068_368G1_scaffold_518_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

717..2123
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum D2957 RepID=S3DRP1_BIFLN
hypothetical protein
PF11187 family protein {ECO:0000313|EMBL:EIJ30818.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_068_368G1_scaffold_518_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2214..2945
DNA (732bp) protein (244aa)
AcrR-type transcriptional regulator n=15 Tax=Bifidobacterium RepID=B3DTT1_BIFLD
transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EIJ22270.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_068_368G1_scaffold_518_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3063..4496
DNA (1434bp) protein (478aa)
Aspartate ammonia-lyase n=2 Tax=Bifidobacterium longum RepID=Q8G7D1_BIFLO
aspA; aspartate ammonia-lyase
Aspartate ammonia-lyase {ECO:0000313|EMBL:AAN24177.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_068_368G1_scaffold_518_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4577..5374
DNA (798bp) protein (266aa)
Small-conductance mechanosensitive channel n=10 Tax=Bifidobacterium longum RepID=D6DA55_BIFLN
mscS; mscs
Transporter, small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:EEQ54396.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_068_368G1_scaffold_518_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5413..6324)
DNA (912bp) protein (304aa)
Predicted metal-dependent membrane protease n=9 Tax=Bifidobacterium longum RepID=D6DA56_BIFLN
metal-dependent membrane protease
Putative uncharacterized protein {ECO:0000313|EMBL:BAJ70401.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_068_368G1_scaffold_518_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6760..8034)
DNA (1275bp) protein (425aa)
ABC-type spermidine/putrescine transport systems, ATPase components n=11 Tax=Bifidobacterium longum RepID=D6DA57_BIFLN
potA; pota
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEY31744.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_068_368G1_scaffold_518_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8039..8893)
DNA (855bp) protein (285aa)
ABC-type spermidine/putrescine transport system permease component II n=10 Tax=Bifidobacterium longum RepID=B3DTT6_BIFLD
potC; potc
Possible permease of ABC transporter {ECO:0000313|EMBL:BAP82946.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
L3_068_368G1_scaffold_518_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8890..9840)
DNA (951bp) protein (317aa)
Spermidine/putrescine ABC transporter permease protein n=14 Tax=Bifidobacterium longum RepID=B3DTT7_BIFLD
ABC transporter permease
Spermidine/putrescine ABC transporter permease protein {ECO:0000313|EMBL:ACD98556.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_368G1_scaffold_518_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9852..11018)
DNA (1167bp) protein (389aa)
Spermidine/putrescine-binding periplasmic protein n=13 Tax=Bifidobacterium RepID=B3DTT8_BIFLD
ABC transporter substrate-binding protein
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:ACD98557.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_068_368G1_scaffold_518_11
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11271..12458)
DNA (1188bp) protein (396aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
D-alanine--D-alanine ligase n=12 Tax=Bifidobacterium RepID=DDL_BIFLO
D-alanine-D-alanine ligase
L3_068_368G1_scaffold_518_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12645..13646)
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=15 Tax=Bacteria RepID=GPDA_BIFLO
glycerol-3-phosphate dehydrogenase
L3_068_368G1_scaffold_518_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13740..14657)
DNA (918bp) protein (306aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=9 Tax=Bifidobacterium longum RepID=B3DTU1_BIFLD
hypothetical protein
Acyl-phosphate glycerol 3-phosphate acyltransferase {ECO:0000313|EMBL:KEY31750.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_068_368G1_scaffold_518_14
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14788..15177)
DNA (390bp) protein (130aa)
Endoribonuclease L-PSP, putative n=7 Tax=Bifidobacterium RepID=D6DA63_BIFLN
tdcF; tdcf
TdcF {ECO:0000313|EMBL:CCY95318.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_068_368G1_scaffold_518_15
unknown

Not on your lists

comp(15254..15472)
DNA (219bp) protein (73aa)

This feature has no annotations

L3_068_368G1_scaffold_518_16
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15644..16165)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4ISR3_BIFAP
PIN domain protein {ECO:0000313|EMBL:KFI60763.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
hypothetical protein
L3_068_368G1_scaffold_518_17
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16165..17346)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4J392_BIFAP
Putative Zn peptidase {ECO:0000313|EMBL:KFI60764.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
hypothetical protein
L3_068_368G1_scaffold_518_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17770..18015
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZXK2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD74777.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_068_368G1_scaffold_518_19
Bifidobacterium saguini, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18040..18798
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZXK2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:KFI92285.1}; TaxID=1437607 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saguini DSM 23967.;"
L3_068_368G1_scaffold_518_20
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18854..20350)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI0003716036
Uncharacterized protein {ECO:0000313|EMBL:EHF02184.1}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
Restriction endonuclease, type II, LlaJI
L3_068_368G1_scaffold_518_21
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20354..22141)
DNA (1788bp) protein (596aa)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI000365D29D
Uncharacterized protein {ECO:0000313|EMBL:EHF02185.1}; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
ATPase
L3_068_368G1_scaffold_518_22
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22150..23013)
DNA (864bp) protein (288aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
modification methylase n=1 Tax=Coriobacteriaceae RepID=UPI000347C701
DNA-methyltransferase Dcm
L3_068_368G1_scaffold_518_23
Olsenella sp. oral taxon 809, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23046..23984)
DNA (939bp) protein (313aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=661087 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella sp. oral taxon 809 str. F0356.;"
putative type II restriction-modification system enzyme Mod (EC:2.1.1.37)
hypothetical protein n=1 Tax=Coriobacteriaceae RepID=UPI00035D57E3
L3_068_368G1_scaffold_518_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24053..24349)
DNA (297bp) protein (99aa)
COPII coat assembly protein Sec16 n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NWX0_BIFBP
Uncharacterized protein {ECO:0000313|EMBL:KFI95070.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
coat assembly protein Sec16
L3_068_368G1_scaffold_518_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24910..25551
DNA (642bp) protein (214aa)
Uncharacterized protein conserved in bacteria n=11 Tax=Bifidobacterium RepID=D6DA64_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY23493.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Displaying 25 items

View Taxonomy