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L3_069_000G1_scaffold_62

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_62_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..359)
DNA (357bp) protein (119aa)
atpA; ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ATP synthase subunit alpha n=6 Tax=Bifidobacterium bifidum RepID=E4NZM1_BIFBP
L3_069_000G1_scaffold_62_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(433..1260)
DNA (828bp) protein (276aa)
ATP synthase subunit delta n=3 Tax=Bifidobacterium RepID=E4NZM2_BIFBP
tph; ATP synthase delta chain
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_069_000G1_scaffold_62_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1290..1820)
DNA (531bp) protein (177aa)
ATP synthase subunit b n=7 Tax=Bifidobacterium RepID=E3EN64_BIFBS
atpF; ATP synthase subunit B
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000G1_scaffold_62_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1871..2101)
DNA (231bp) protein (77aa)
ATP synthase C chain n=8 Tax=Bifidobacterium RepID=E3EN65_BIFBS
atpE; ATP synthase subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_000G1_scaffold_62_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2213..3025)
DNA (813bp) protein (271aa)
atpB; ATP synthase F0 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=8 Tax=Bifidobacterium RepID=E3EN66_BIFBS
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000G1_scaffold_62_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3555..4589)
DNA (1035bp) protein (345aa)
metA; homoserine O-succinyl transferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Homoserine O-succinyltransferase n=5 Tax=Bifidobacterium RepID=E4NZM6_BIFBP
L3_069_000G1_scaffold_62_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4790..5137)
DNA (348bp) protein (116aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4VBD6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53801.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_069_000G1_scaffold_62_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5244..5708
DNA (465bp) protein (155aa)
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2DMP0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43965.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_000G1_scaffold_62_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5859..8132)
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WK31_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05244.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_069_000G1_scaffold_62_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8356..10671
DNA (2316bp) protein (772aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
alpha-amylase (EC:3.2.1.1)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZN0_BIFBP
L3_069_000G1_scaffold_62_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10838..11332
DNA (495bp) protein (165aa)
ppa; inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Inorganic pyrophosphatase n=8 Tax=Bifidobacterium RepID=E3EN72_BIFBS
L3_069_000G1_scaffold_62_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11757..12287
DNA (531bp) protein (177aa)
Putative manganese efflux pump MntP n=5 Tax=Bifidobacterium RepID=E4NZN2_BIFBP
hypothetical protein
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_069_000G1_scaffold_62_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12660..13409)
DNA (750bp) protein (250aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WK36_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB24596.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_069_000G1_scaffold_62_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13583..14326
DNA (744bp) protein (248aa)
Transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=K2HTH9_BIFBI
GlnR Transcriptional regulatory protein {ECO:0000313|EMBL:KFI43971.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
glnR; transcriptional regulator
L3_069_000G1_scaffold_62_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14339..15001
DNA (663bp) protein (221aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E3EN76_BIFBS
L3_069_000G1_scaffold_62_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15085..16641
DNA (1557bp) protein (519aa)
Putative D, D-dipeptide-binding periplasmic protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WK39_BIFBI
Putative D, D-dipeptide-binding periplasmic protein {ECO:0000313|EMBL:AFL05252.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ddpA; putative D, D-dipeptide-binding periplasmic protein
L3_069_000G1_scaffold_62_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


16724..19465
DNA (2742bp) protein (914aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Valine--tRNA ligase n=4 Tax=Bifidobacterium RepID=E3EN78_BIFBS
valS; valyl-tRNA synthetase
L3_069_000G1_scaffold_62_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19583..21787)
DNA (2205bp) protein (735aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMQ1_BIFBI
Putative secreted protein {ECO:0000313|EMBL:KFI43975.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_069_000G1_scaffold_62_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21891..22331)
DNA (441bp) protein (147aa)
chorismate mutase (EC:5.4.99.5)
TyrA Chorismate mutase n=7 Tax=Bifidobacterium RepID=E4NZN9_BIFBP
Chorismate mutase {ECO:0000313|EMBL:ERI82833.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_069_000G1_scaffold_62_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22432..22974)
DNA (543bp) protein (181aa)
Transcriptional regulator, AsnC family n=2 Tax=Bifidobacterium bifidum RepID=U2BX98_BIFBI
Transcriptional regulator {ECO:0000313|EMBL:KFI43977.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
AsnC family transcriptional regulator
L3_069_000G1_scaffold_62_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23144..24373
DNA (1230bp) protein (410aa)
aspC; aspartate amino transferase (EC:2.6.1.1)
Aspartate amino transferase {ECO:0000313|EMBL:AFL05257.1}; EC=2.6.1.1 {ECO:0000313|EMBL:AFL05257.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Aspartate amino transferase n=3 Tax=Bifidobacterium bifidum RepID=I3WK44_BIFBI
L3_069_000G1_scaffold_62_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24471..26510)
DNA (2040bp) protein (680aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Transcription termination factor Rho n=2 Tax=Bifidobacterium bifidum RepID=K2I6G3_BIFBI
rho; transcription termination factor
L3_069_000G1_scaffold_62_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26742..28355)
DNA (1614bp) protein (538aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4VBB9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50884.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_069_000G1_scaffold_62_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28595..28909)
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4VBB8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43981.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_069_000G1_scaffold_62_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28906..29949)
DNA (1044bp) protein (348aa)
Acetyltransferase, GNAT family n=4 Tax=Bifidobacterium RepID=E4VBB7_BIFBI
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFR50882.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
acetyltransferase family protein
L3_069_000G1_scaffold_62_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30165..31664)
DNA (1500bp) protein (500aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=3 Tax=Bifidobacterium bifidum RepID=E4VBB6_BIFBI
gatB; glutamyl-tRNA(Gln) amidotransferase subunit B
L3_069_000G1_scaffold_62_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31689..33227)
DNA (1539bp) protein (513aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=3 Tax=Bifidobacterium bifidum RepID=E4VBB5_BIFBI
gatA; glutamyl-tRNA(Gln) amido transferase subunit A
L3_069_000G1_scaffold_62_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33230..33529)
DNA (300bp) protein (100aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=8 Tax=Bifidobacterium RepID=I3WK51_BIFBI
gatC2; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
L3_069_000G1_scaffold_62_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33534..34193)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMR6_BIFBI
TP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43986.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
TP-binding protein of ABC transporter system
L3_069_000G1_scaffold_62_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34304..34573)
DNA (270bp) protein (90aa)
TP-binding protein of ABC transporter system (EC:3.6.3.31)
TP-binding protein of ABC transporter system n=3 Tax=Bifidobacterium bifidum RepID=E4NZX7_BIFBP
TP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43987.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 154 in total

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