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L3_069_000G1_scaffold_171

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_171_1
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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26..1255
DNA (1230bp) protein (410aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
Acetate kinase n=2 Tax=Bifidobacterium RepID=C0BSZ6_9BIFI
acetate kinase
L3_069_000G1_scaffold_171_2
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1545..3371
DNA (1827bp) protein (609aa)
Acyltransferase n=2 Tax=Bifidobacterium RepID=C0BSZ7_9BIFI
Acyltransferase {ECO:0000313|EMBL:EEG70498.1}; Putative acyltransferase {ECO:0000313|EMBL:BAR03465.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
acetylase
L3_069_000G1_scaffold_171_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3482..4873)
DNA (1392bp) protein (464aa)
Xanthine permease n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSZ8_9BIFI
Xanthine permease {ECO:0000313|EMBL:EEG70499.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
uracil permease
L3_069_000G1_scaffold_171_4
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4931..5512)
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
Xanthine phosphoribosyltransferase n=2 Tax=Bifidobacterium RepID=C0BSZ9_9BIFI
xanthine phosphoribosyltransferase
L3_069_000G1_scaffold_171_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5643..8360
DNA (2718bp) protein (906aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Putative ATP-dependent DNA helicase PcrA n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT00_9BIFI
ATP-dependent DNA helicase PcrA
L3_069_000G1_scaffold_171_6
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8481..8879
DNA (399bp) protein (133aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BT01_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28388.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
hypothetical protein
L3_069_000G1_scaffold_171_7
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8886..10100
DNA (1215bp) protein (405aa)
Efflux ABC transporter, permease protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT02_9BIFI
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEG70503.1}; Putative ABC transporter permease component {ECO:0000313|EMBL:BAR03470.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
ABC transporter permease
L3_069_000G1_scaffold_171_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10100..10936
DNA (837bp) protein (279aa)
ABC transporter, ATP-binding protein n=2 Tax=Bifidobacterium RepID=C0BT03_9BIFI
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEF28386.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC transporter ATP-binding protein
L3_069_000G1_scaffold_171_9
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


11215..11841
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT04_9BIFI
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
rbsD; 30S ribosomal protein S4
L3_069_000G1_scaffold_171_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11969..12283)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P6C0_9BIFI
Membrane protein {ECO:0000313|EMBL:KEF28384.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
membrane protein
L3_069_000G1_scaffold_171_11
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12379..13062
DNA (684bp) protein (228aa)
Phosphoglycerate mutase family protein n=2 Tax=Bifidobacterium RepID=C0BT06_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC16221.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
fructose-2,6-bisphosphatase
L3_069_000G1_scaffold_171_12
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13119..13541
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BT07_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG70508.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
hypothetical protein
L3_069_000G1_scaffold_171_13
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13541..13777
DNA (237bp) protein (79aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BT08_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28381.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
hypothetical protein
L3_069_000G1_scaffold_171_14
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13867..16545
DNA (2679bp) protein (893aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Alanine--tRNA ligase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT09_9BIFI
alanyl-tRNA synthetase
L3_069_000G1_scaffold_171_15
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16556..17029
DNA (474bp) protein (158aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Putative Holliday junction resolvase n=2 Tax=Bifidobacterium RepID=C0BT10_9BIFI
Holliday junction resolvase
L3_069_000G1_scaffold_171_16
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17026..18210
DNA (1185bp) protein (395aa)
YceG family protein n=2 Tax=Bifidobacterium RepID=C0BT11_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28378.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
hypothetical protein
L3_069_000G1_scaffold_171_17
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18213..18710)
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BT12_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EEG70513.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
peptidase A24
L3_069_000G1_scaffold_171_18
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18731..19924
DNA (1194bp) protein (398aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Chorismate synthase n=2 Tax=Bifidobacterium RepID=C0BT13_9BIFI
chorismate synthase
L3_069_000G1_scaffold_171_19
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19932..21560
DNA (1629bp) protein (543aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6P2P1_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14974.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
3-dehydroquinate synthase
L3_069_000G1_scaffold_171_20
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21581..22030
DNA (450bp) protein (150aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
3-dehydroquinate dehydratase n=2 Tax=Bifidobacterium RepID=C0BT15_9BIFI
3-dehydroquinate dehydratase
L3_069_000G1_scaffold_171_21
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22452..27695
DNA (5244bp) protein (1748aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00081436}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00081436};; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Pullulanase, type I n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT18_9BIFI
pullulanase
L3_069_000G1_scaffold_171_22
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27828..29489
DNA (1662bp) protein (554aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
CTP synthase n=2 Tax=Bifidobacterium RepID=C0BT19_9BIFI
CTP synthetase
L3_069_000G1_scaffold_171_23
unknown

Not on your lists

29532..29639
DNA (108bp) protein (36aa)

This feature has no annotations

L3_069_000G1_scaffold_171_24
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29636..31318
DNA (1683bp) protein (561aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT20_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KEF28371.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
hypothetical protein
L3_069_000G1_scaffold_171_25
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31499..32995
DNA (1497bp) protein (499aa)
FeS assembly protein SufB n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT21_9BIFI
FeS assembly protein SufB {ECO:0000313|EMBL:EEG70522.1}; Putative ABC transporter permease component {ECO:0000313|EMBL:BAR03487.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Fe-S cluster assembly protein SufB
L3_069_000G1_scaffold_171_26
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33001..34224
DNA (1224bp) protein (408aa)
FeS assembly protein SufD n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT22_9BIFI
FeS assembly protein SufD {ECO:0000313|EMBL:EEG70523.1}; Putative ABC transporter permease component {ECO:0000313|EMBL:BAR03488.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
ABC transporter permease
L3_069_000G1_scaffold_171_27
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34243..35022
DNA (780bp) protein (260aa)
FeS assembly ATPase SufC n=2 Tax=Bifidobacterium RepID=C0BT23_9BIFI
FeS assembly ATPase SufC {ECO:0000313|EMBL:EEG70524.1}; Putative ABC transporter ATP-binding component {ECO:0000313|EMBL:BAR03489.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
sufC; cysteine desulfurase
L3_069_000G1_scaffold_171_28
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35019..36293
DNA (1275bp) protein (425aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Cysteine desulfurase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT24_9BIFI
cysteine desulfurase
L3_069_000G1_scaffold_171_29
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36314..36850
DNA (537bp) protein (179aa)
SUF system FeS assembly protein, NifU family n=2 Tax=Bifidobacterium RepID=C0BT25_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14964.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
nitrogen fixation protein NifU
L3_069_000G1_scaffold_171_30
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36994..37581
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BT27_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14963.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
Displaying items 1-30 of 109 in total

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