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L3_069_000G1_scaffold_173

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_173_1
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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35..334
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=D4CFF6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE11608.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_069_000G1_scaffold_173_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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688..1206
DNA (519bp) protein (173aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YS71_9CLOT
L3_069_000G1_scaffold_173_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1200..1910
DNA (711bp) protein (237aa)
Acetyltransferase GNAT family n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5H2_9CLOT
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDD38824.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Acetyltransferases, including N-acetylases of ribosomal proteins
L3_069_000G1_scaffold_173_4
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1983..2912
DNA (930bp) protein (310aa)
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DM03_CLOSC
L3_069_000G1_scaffold_173_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2926..3585
DNA (660bp) protein (220aa)
Transcriptional regulator GntR family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD11_9CLOT
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDD38826.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
transcriptional regulator, GntR family
L3_069_000G1_scaffold_173_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3575..4795
DNA (1221bp) protein (407aa)
Oxidoreductase aldo/keto reductase family protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A7U6_9CLOT
Oxidoreductase aldo/keto reductase family protein {ECO:0000313|EMBL:CDD38827.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted oxidoreductases of the aldo/keto reductase family
L3_069_000G1_scaffold_173_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5055..5684
DNA (630bp) protein (210aa)
Transcriptional regulator TetR family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD20_9CLOT
Transcriptional regulator TetR family {ECO:0000313|EMBL:CDD38836.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Transcriptional regulator
L3_069_000G1_scaffold_173_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5748..6875
DNA (1128bp) protein (376aa)
RND family efflux transporter MFP subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R7A7V7_9CLOT
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:CDD38837.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RND family efflux transporter, MFP subunit
L3_069_000G1_scaffold_173_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6888..9941
DNA (3054bp) protein (1018aa)
RND transporter HAE1/HME family permease protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5I6_9CLOT
RND transporter HAE1/HME family permease protein {ECO:0000313|EMBL:CDD38839.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Cation/multidrug efflux pump
L3_069_000G1_scaffold_173_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9989..11146
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YSD7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38888.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_069_000G1_scaffold_173_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11162..12445
DNA (1284bp) protein (428aa)
Outer membrane efflux protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5P1_9CLOT
Outer membrane efflux protein {ECO:0000313|EMBL:CDD38889.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Outer membrane efflux protein.
L3_069_000G1_scaffold_173_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12571..13038)
DNA (468bp) protein (156aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.-)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YY74_9CLOT
L3_069_000G1_scaffold_173_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13059..14258)
DNA (1200bp) protein (400aa)
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC:4.1.99.12)
Riboflavin biosynthesis protein RibBA n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD73_9CLOT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_069_000G1_scaffold_173_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14270..14917)
DNA (648bp) protein (216aa)
Riboflavin synthase alpha subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R6YSE3_9CLOT
Riboflavin synthase alpha subunit {ECO:0000313|EMBL:CDD38893.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
riboflavin synthase, alpha subunit
L3_069_000G1_scaffold_173_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14898..16004)
DNA (1107bp) protein (369aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Clostridium sp. CAG:299 RepID=R7A821_9CLOT
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L3_069_000G1_scaffold_173_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16511..17281)
DNA (771bp) protein (257aa)
Stage II sporulation protein R n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5Q2_9CLOT
Stage II sporulation protein R {ECO:0000313|EMBL:CDD38899.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Stage II sporulation protein R (spore_II_R).
L3_069_000G1_scaffold_173_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17421..18482
DNA (1062bp) protein (354aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YY85_9CLOT
L3_069_000G1_scaffold_173_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18514..19326
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD82_9CLOT
L3_069_000G1_scaffold_173_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19418..19873
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A825_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38902.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_069_000G1_scaffold_173_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19913..20506
DNA (594bp) protein (198aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YSF5_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD38903.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_069_000G1_scaffold_173_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20835..21392)
DNA (558bp) protein (186aa)
Putative LysR family transcriptional regulator n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5Q9_9CLOT
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CDD38904.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
putative LysR family transcriptional regulator
L3_069_000G1_scaffold_173_22
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21515..21796
DNA (282bp) protein (94aa)
Putative membrane protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY31_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EEA85578.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
hypothetical protein
L3_069_000G1_scaffold_173_23
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

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21771..22295
DNA (525bp) protein (175aa)
Permease n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5QFP1_9FIRM
Permease {ECO:0000313|EMBL:CCZ27423.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
permease
L3_069_000G1_scaffold_173_24
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22349..22843
DNA (495bp) protein (165aa)
glutamate racemase (EC:5.1.1.3)
RHS repeat-associated core domain protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CBG7_9CLOT
RHS repeat-associated core domain protein {ECO:0000313|EMBL:EFE13049.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_069_000G1_scaffold_173_25
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23034..23486
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KKP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62717.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L3_069_000G1_scaffold_173_26
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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23647..23820
DNA (174bp) protein (58aa)
YD repeat (Two copies) n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VSV7_9CLOT
YD repeat (Two copies) {ECO:0000313|EMBL:ENY93775.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_069_000G1_scaffold_173_27
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23845..24045
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DHF0_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK77124.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_069_000G1_scaffold_173_28
unknown

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comp(24298..24450)
DNA (153bp) protein (51aa)

This feature has no annotations

L3_069_000G1_scaffold_173_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24425..24904)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZNI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44939.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L3_069_000G1_scaffold_173_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25268..29122
DNA (3855bp) protein (1285aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZH05_9CLOT
Displaying items 1-30 of 115 in total

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