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L3_069_000G1_scaffold_174

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_174_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(121..4407)
DNA (4287bp) protein (1429aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=4 Tax=Parabacteroides RepID=A7AD64_9PORP
L3_069_000G1_scaffold_174_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4481..8293)
DNA (3813bp) protein (1271aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=4 Tax=Parabacteroides RepID=A7AD65_9PORP
L3_069_000G1_scaffold_174_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8401..8778)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=6 Tax=Parabacteroides RepID=A7AD66_9PORP
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rplL; 50S ribosomal protein L7/L12
L3_069_000G1_scaffold_174_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(8824..9354)
DNA (531bp) protein (177aa)
Ribosomal protein L10 n=3 Tax=Parabacteroides RepID=A7AD67_9PORP
Ribosomal protein L10 {ECO:0000313|EMBL:CDD13968.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
rplJ; 50S ribosomal protein L10
L3_069_000G1_scaffold_174_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(9371..10069)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=3 Tax=Parabacteroides RepID=A7AD68_9PORP
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rplA; 50S ribosomal protein L1
L3_069_000G1_scaffold_174_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(10085..10528)
DNA (444bp) protein (148aa)
50S ribosomal protein L11 n=6 Tax=Parabacteroides RepID=A7AD69_9PORP
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
rplK; 50S ribosomal protein L11
L3_069_000G1_scaffold_174_7
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10603..11145)
DNA (543bp) protein (181aa)
Transcription termination/antitermination protein NusG n=6 Tax=Parabacteroides RepID=A7AD70_9PORP
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
transcription anti-termination protein
L3_069_000G1_scaffold_174_8
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11158..11352)
DNA (195bp) protein (65aa)
Protein translocase subunit SecE n=6 Tax=Parabacteroides RepID=A7AD71_9PORP
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
preprotein translocase subunit SecE
L3_069_000G1_scaffold_174_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11492..12679)
DNA (1188bp) protein (396aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=3 Tax=Parabacteroides RepID=A7AD72_9PORP
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_069_000G1_scaffold_174_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13274..13573)
DNA (300bp) protein (100aa)
Ribosomal subunit interface protein n=3 Tax=Parabacteroides merdae RepID=A7AD73_9PORP
Ribosomal subunit interface protein {ECO:0000313|EMBL:EDN87015.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
sigma-54 modulation protein
L3_069_000G1_scaffold_174_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13570..14478)
DNA (909bp) protein (303aa)
Tyrosine recombinase XerC n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD74_9PORP
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
tyrosine type site-specific recombinase
L3_069_000G1_scaffold_174_12
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14555..14746)
DNA (192bp) protein (64aa)
30S ribosomal protein S21 n=6 Tax=Parabacteroides RepID=A7AD75_9PORP
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
rpsU; 30S ribosomal protein S21
L3_069_000G1_scaffold_174_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14844..15893)
DNA (1050bp) protein (350aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Methylthioribose-1-phosphate isomerase n=2 Tax=Parabacteroides merdae RepID=A7AD76_9PORP
mtnA; methylthioribose-1-phosphate isomerase
L3_069_000G1_scaffold_174_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16218..17294
DNA (1077bp) protein (359aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD79_9PORP
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase {ECO:0000313|EMBL:EDN87021.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_069_000G1_scaffold_174_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17649..18590)
DNA (942bp) protein (314aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=4 Tax=Parabacteroides RepID=A7AD80_9PORP
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:EDN87022.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_069_000G1_scaffold_174_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18737..20428)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6B9R4_9PORP
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EDN87023.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase family protein
L3_069_000G1_scaffold_174_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20487..21326)
DNA (840bp) protein (280aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5YV69_9PORP
Phospholipase patatin family {ECO:0000313|EMBL:CDD11136.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_069_000G1_scaffold_174_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21507..23711
DNA (2205bp) protein (735aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=3 Tax=Parabacteroides RepID=A7AD83_9PORP
L3_069_000G1_scaffold_174_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24177..26369
DNA (2193bp) protein (731aa)
Glutamate--ammonia ligase, catalytic domain protein n=5 Tax=Parabacteroides RepID=A7AD85_9PORP
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EDN87027.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glutamine synthetase
L3_069_000G1_scaffold_174_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26467..27627
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BAG7_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87028.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
conserved hypothetical lipoprotein
L3_069_000G1_scaffold_174_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27643..28614)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B9R8_9PORP
F5/8 type C domain protein {ECO:0000313|EMBL:EDN87029.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
beta-glycosidase
L3_069_000G1_scaffold_174_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28991..29305
DNA (315bp) protein (105aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=K5ZU77_9PORP
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDN87030.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transcriptional regulator
L3_069_000G1_scaffold_174_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29366..30559)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BX73_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN06989.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
glycoside hydrolase
L3_069_000G1_scaffold_174_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30498..32498)
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD90_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87032.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_069_000G1_scaffold_174_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32666..34015)
DNA (1350bp) protein (450aa)
Outer membrane efflux protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AD91_9PORP
Outer membrane efflux protein {ECO:0000313|EMBL:EDN87033.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
outer membrane transport/efflux protein
L3_069_000G1_scaffold_174_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34033..35154)
DNA (1122bp) protein (374aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Parabacteroides merdae RepID=A7AD92_9PORP
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EDN87034.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
membrane fusion efflux protein
L3_069_000G1_scaffold_174_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35233..36501)
DNA (1269bp) protein (423aa)
Efflux ABC transporter permease protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZE4_9PORP
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD11567.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
efflux ABC transporter permease
L3_069_000G1_scaffold_174_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36526..37791)
DNA (1266bp) protein (422aa)
Efflux ABC transporter, permease protein n=2 Tax=Parabacteroides merdae RepID=A7AD94_9PORP
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EDN87036.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
efflux ABC transporter permease
L3_069_000G1_scaffold_174_29
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37784..38467)
DNA (684bp) protein (228aa)
ABC transporter ATP-binding protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXB2_9PORP
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD11564.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ABC transporter ATP-binding protein
L3_069_000G1_scaffold_174_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

38826..40007
DNA (1182bp) protein (394aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Phosphoribosylglycinamide formyltransferase 2 n=2 Tax=Parabacteroides merdae RepID=A7AD96_9PORP
phosphoribosylglycinamide formyltransferase
Displaying items 1-30 of 107 in total

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