ggKbase home page

L3_069_000G1_scaffold_1044

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_1044_1
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(164..2911)
DNA (2748bp) protein (916aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Collinsella sp. CAG:166 RepID=R6A2E6_9ACTN
L3_069_000G1_scaffold_1044_2
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2923..4953)
DNA (2031bp) protein (677aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZM41_9ACTN
L3_069_000G1_scaffold_1044_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5059..5622)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECR7_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75767.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L3_069_000G1_scaffold_1044_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5609..6715)
DNA (1107bp) protein (369aa)
DNA replication and repair protein RecF n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECR8_9ACTN
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
DNA replication and repair protein RecF
L3_069_000G1_scaffold_1044_5
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6725..7828)
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZFJ5_9ACTN
L3_069_000G1_scaffold_1044_6
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8067..9773)
DNA (1707bp) protein (569aa)
Chromosomal replication initiator protein dnaA n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECS0_9ACTN
Chromosomal replication initiator protein dnaA {ECO:0000256|RuleBase:RU000577}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
chromosomal replication initiator protein DnaA
L3_069_000G1_scaffold_1044_7
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9789..11141)
DNA (1353bp) protein (451aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z6I9_9ACTN
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDA35328.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
ATP-binding region ATPase domain-containing protein
L3_069_000G1_scaffold_1044_8
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


11466..11621
DNA (156bp) protein (52aa)
50S ribosomal protein L34 n=3 Tax=Collinsella RepID=A4ECS2_9ACTN
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
LSU ribosomal protein L34P
L3_069_000G1_scaffold_1044_9
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11642..11980
DNA (339bp) protein (113aa)
Ribonuclease P protein component {ECO:0000256|SAAS:SAAS00143752}; EC=3.1.26.5 {ECO:0000256|SAAS:SAAS00143815};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Ribonuclease P protein component n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECS3_9ACTN
ribonuclease P protein component
L3_069_000G1_scaffold_1044_10
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

11977..12201
DNA (225bp) protein (75aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8Z7_9ACTN
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000G1_scaffold_1044_11
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

12231..13001
DNA (771bp) protein (257aa)
Membrane protein insertase, YidC/Oxa1 family n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECS4_9ACTN
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:EBA38609.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
YidC/Oxa1 family membrane protein insertase
L3_069_000G1_scaffold_1044_12
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13046..13615
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z6I4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35323.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
single-stranded nucleic acid binding R3H domain-containing protein
L3_069_000G1_scaffold_1044_13
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

13711..14448
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECS6_9ACTN
methyltransferase GidB
L3_069_000G1_scaffold_1044_14
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

14581..15381
DNA (801bp) protein (267aa)
Uncharacterized protein n=2 Tax=Collinsella RepID=R5ZM18_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75756.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
chromosome segregation ATPase
L3_069_000G1_scaffold_1044_15
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15374..16279
DNA (906bp) protein (302aa)
ParB-like protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8Z2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75755.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
parB-like partition protein
L3_069_000G1_scaffold_1044_16
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16269..16523
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZFF8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35319.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000G1_scaffold_1044_17
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(16717..17769)
DNA (1053bp) protein (351aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Collinsella sp. CAG:166 RepID=R6A1P2_9ACTN
L3_069_000G1_scaffold_1044_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

17855..18820
DNA (966bp) protein (322aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z5U7_9ACTN
L3_069_000G1_scaffold_1044_19
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18814..21708
DNA (2895bp) protein (965aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
Putative DnaQ family exonuclease/DinG family helicase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZEU7_9ACTN
Putative DnaQ family exonuclease/DinG family helicase {ECO:0000313|EMBL:CDA35089.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L3_069_000G1_scaffold_1044_20
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21705..22622)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8A2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35090.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000G1_scaffold_1044_21
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(22609..23631)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLG5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35091.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
helix-turn-helix type 11 domain-containing protein
L3_069_000G1_scaffold_1044_22
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

23829..26960
DNA (3132bp) protein (1044aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38620.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
hypothetical protein
L3_069_000G1_scaffold_1044_23
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

26983..27201
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z5V2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35093.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000G1_scaffold_1044_24
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27267..30698)
DNA (3432bp) protein (1144aa)
TQXA domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT6_9ACTN
TQXA domain protein {ECO:0000313|EMBL:EBA38621.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Cna B domain-containing protein
L3_069_000G1_scaffold_1044_25
unknown

Not on your lists

comp(31021..31383)
DNA (363bp) protein (121aa)

This feature has no annotations

L3_069_000G1_scaffold_1044_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31496..32842
DNA (1347bp) protein (449aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT7_9ACTN
L3_069_000G1_scaffold_1044_27
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32945..33817
DNA (873bp) protein (291aa)
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Roseburia sp. CAG:197 RepID=R5YHF3_9FIRM
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CDA24174.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_069_000G1_scaffold_1044_28
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33814..35613
DNA (1800bp) protein (600aa)
Signal transduction histidine kinase n=1 Tax=Clostridium sp. CAG:127 RepID=R5P7B7_9CLOT
Signal transduction histidine kinase {ECO:0000313|EMBL:CCZ05691.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Signal transduction histidine kinase
L3_069_000G1_scaffold_1044_29
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

35727..35990
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8J8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35205.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L3_069_000G1_scaffold_1044_30
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

35990..37201
DNA (1212bp) protein (404aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZF44_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI75743.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy