ggKbase home page

L3_069_000G1_scaffold_2720

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_2720_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(230..511)
DNA (282bp) protein (94aa)
Uncharacterized protein n=175 Tax=Clostridium difficile RepID=Q181F3_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26635.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_069_000G1_scaffold_2720_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(733..2262)
DNA (1530bp) protein (510aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Lysine--tRNA ligase n=165 Tax=Clostridium difficile RepID=C9XSF6_CLODC
lysS; lysyl-tRNA synthetase
L3_069_000G1_scaffold_2720_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2277..2756)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=215 Tax=Clostridium difficile RepID=GREA_CLOD6
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_069_000G1_scaffold_2720_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2865..3833)
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
tRNA-dihydrouridine synthase n=7 Tax=Clostridium difficile RepID=T2UL00_CLODI
tRNA-dihydrouridine synthase
L3_069_000G1_scaffold_2720_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3970..4740)
DNA (771bp) protein (257aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Type III pantothenate kinase n=199 Tax=Clostridium difficile RepID=C9XSF9_CLODC
pantothenate kinase
L3_069_000G1_scaffold_2720_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4759..5376)
DNA (618bp) protein (206aa)
Uncharacterized protein n=178 Tax=Clostridium difficile RepID=G6BRF2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE07445.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_000G1_scaffold_2720_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5533..6501)
DNA (969bp) protein (323aa)
Peptidase S58 family protein n=128 Tax=Clostridium difficile RepID=C9XSG1_CLODC
peptidase
Peptidase S58 family protein {ECO:0000313|EMBL:EQG73125.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_000G1_scaffold_2720_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6494..7471)
DNA (978bp) protein (326aa)
birA; bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase (EC:6.3.4.15)
BirA bifunctional protein {ECO:0000313|EMBL:CAJ70464.1}; EC=6.3.4.15 {ECO:0000313|EMBL:CAJ70464.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Biotin--[acetyl-CoA-carboxylase] ligase n=23 Tax=Clostridium difficile RepID=T2X019_CLODI
L3_069_000G1_scaffold_2720_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7786..9780)
DNA (1995bp) protein (665aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
ATP-dependent zinc metalloprotease FtsH n=10 Tax=Clostridium difficile RepID=C9XSG3_CLODC
ftsH2; cell division protein
L3_069_000G1_scaffold_2720_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9790..11178)
DNA (1389bp) protein (463aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
tRNA(Ile)-lysidine synthase n=162 Tax=Clostridium difficile RepID=TILS_CLOD6
ATPase
L3_069_000G1_scaffold_2720_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11361..11789)
DNA (429bp) protein (143aa)
Uncharacterized protein n=25 Tax=Clostridium difficile RepID=C9XSG5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE07453.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_069_000G1_scaffold_2720_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11806..12612)
DNA (807bp) protein (269aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Glutamate racemase n=201 Tax=Clostridium difficile RepID=C9XSG6_CLODC
glutamate racemase
L3_069_000G1_scaffold_2720_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12814..13320)
DNA (507bp) protein (169aa)
Cell Wall Hydrolase family protein n=1 Tax=Clostridium difficile F253 RepID=T4A9H8_CLODI
spore cortex-lytic enzyme
Putative spore cortex-lytic enzyme {ECO:0000313|EMBL:CDS90200.1}; Putative spore cortex-lytic hydrolase {ECO:0000313|EMBL:CEK00279.1}; Spore cortex-lytic enzyme {ECO:0000313|EMBL:CKG69492.1}; Spore-cortex-lytic protein {ECO:0000313|EMBL:CDS89982.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_000G1_scaffold_2720_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13350..14009)
DNA (660bp) protein (220aa)
Stage II sporulation protein n=211 Tax=Clostridium difficile RepID=C9XSG8_CLODC
stage II sporulation protein
Pro-sigma(E) endopeptidase (Stage II sporulation) {ECO:0000313|EMBL:CCL31802.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_000G1_scaffold_2720_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14154..14870)
DNA (717bp) protein (239aa)
FCD domain protein n=3 Tax=Clostridium difficile RepID=G6B3Q4_CLODI
FCD domain protein {ECO:0000313|EMBL:EHJ33735.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
GntR family transcriptional regulator
L3_069_000G1_scaffold_2720_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14818..15708)
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=167 Tax=Clostridium difficile RepID=ISPE_CLOD6
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_069_000G1_scaffold_2720_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15826..17220)
DNA (1395bp) protein (465aa)
LysM domain protein n=73 Tax=Clostridium difficile RepID=T3G2W0_CLODC
sipL; spore coat protein
Putative phage cell wall hydrolase {ECO:0000313|EMBL:CCL24041.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_069_000G1_scaffold_2720_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17258..17566)
DNA (309bp) protein (103aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=D5QA10_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH05266.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L3_069_000G1_scaffold_2720_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17672..18532)
DNA (861bp) protein (287aa)
Sporulation-specific protease n=217 Tax=Clostridium difficile RepID=Q181G9_CLOD6
peptidase
Sporulation-specific protease {ECO:0000313|EMBL:CCK96060.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_069_000G1_scaffold_2720_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18616..19554)
DNA (939bp) protein (313aa)
Membrane dipeptidase family protein n=2 Tax=Clostridium difficile RepID=T4PAY1_CLODI
Membrane dipeptidase family protein {ECO:0000313|EMBL:EQE58751.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
dipeptidase
L3_069_000G1_scaffold_2720_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19664..19825)
DNA (162bp) protein (54aa)
Uncharacterized protein n=213 Tax=Clostridium difficile RepID=C9XSH5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE58762.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_000G1_scaffold_2720_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19835..20332)
DNA (498bp) protein (166aa)
Uncharacterized protein n=191 Tax=Clostridium difficile RepID=Q181H5_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70478.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_000G1_scaffold_2720_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20447..21157)
DNA (711bp) protein (237aa)
Uncharacterized protein n=180 Tax=Clostridium difficile RepID=C9XSH7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24047.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_069_000G1_scaffold_2720_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21333..21863)
DNA (531bp) protein (177aa)
Uncharacterized protein n=32 Tax=Clostridium difficile RepID=T2W8P4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE58743.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
conserved hypothetical protein
L3_069_000G1_scaffold_2720_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21880..22110)
DNA (231bp) protein (77aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=Q181H7_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24049.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_069_000G1_scaffold_2720_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22125..23519)
DNA (1395bp) protein (465aa)
Solute symporter family protein n=166 Tax=Clostridium difficile RepID=T3G1L2_CLODC
putative sodium:solute symporter
Solute symporter family protein {ECO:0000313|EMBL:EQE58752.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_000G1_scaffold_2720_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23645..24898)
DNA (1254bp) protein (418aa)
Major Facilitator Superfamily protein n=161 Tax=Clostridium difficile RepID=T3FZW4_CLODC
major facilitator superfamily transporter
Major Facilitator Superfamily protein {ECO:0000313|EMBL:EQE58758.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_000G1_scaffold_2720_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24949..26103)
DNA (1155bp) protein (385aa)
Methionine gamma-lyase {ECO:0000313|EMBL:CCL24052.1}; EC=4.4.1.11 {ECO:0000313|EMBL:CCL24052.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
mdeA; methionine gamma-lyase (EC:4.4.1.11)
Methionine gamma-lyase n=43 Tax=Clostridium difficile RepID=T2X198_CLODI
L3_069_000G1_scaffold_2720_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26663..27232)
DNA (570bp) protein (190aa)
Resolvase n=194 Tax=Clostridium difficile RepID=Q181H9_CLOD6
resolvase
Resolvase {ECO:0000313|EMBL:CEK00295.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS90232.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying 29 items

View Taxonomy