ggKbase home page

L3_069_000G1_scaffold_606

Search features with annotation key words

Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_606_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

531..644
DNA (114bp) protein (38aa)
Sigma-70, region 4 (Modular protein) n=63 Tax=Clostridium difficile RepID=U4B0I8_CLODI
Uncharacterised protein {ECO:0000313|EMBL:CKH15113.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_000G1_scaffold_606_2
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

602..1012
DNA (411bp) protein (137aa)
Uncharacterized protein n=68 Tax=Firmicutes RepID=G6B3Y0_CLODI
sigma facto
Uncharacterized protein {ECO:0000313|EMBL:EOK00167.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
L3_069_000G1_scaffold_606_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1501..1653
DNA (153bp) protein (51aa)
Uncharacterized protein n=65 Tax=Firmicutes RepID=G6B3Y1_CLODI
putative conjugative transposon proteinTn1549-like, CTn5-Orf39
Uncharacterized protein {ECO:0000313|EMBL:EHJ33513.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_069_000G1_scaffold_606_4
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1754..3430
DNA (1677bp) protein (559aa)
Site-specific recombinase, resolvase family protein n=5 Tax=Clostridium difficile RepID=T2Y6K7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EOK00169.1}; TaxID=1169307 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0359.;"
hypothetical protein
L3_069_000G1_scaffold_606_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3903..4541)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P42 RepID=T4PE99_CLODI
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG75706.1}; Uncharacterized protein {ECO:0000313|EMBL:CEK00028.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_000G1_scaffold_606_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4951..5127)
DNA (177bp) protein (59aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=F3Y5W2_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFH15105.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L3_069_000G1_scaffold_606_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6036..6437
DNA (402bp) protein (134aa)
RNHCP domain protein n=2 Tax=Clostridium difficile RepID=T4PDZ9_CLODI
hypothetical protein
Putative zinc finger protein {ECO:0000313|EMBL:CCL31626.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_000G1_scaffold_606_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6443..7501
DNA (1059bp) protein (353aa)
putative ribosome biogenesis GTPase RsgA;putative EngC-like GTPase (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Clostridium difficile RepID=T4Z616_CLODI
L3_069_000G1_scaffold_606_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8039..8734
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4P8B4_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31624.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_069_000G1_scaffold_606_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8912..9802
DNA (891bp) protein (297aa)
Putative exported protein n=15 Tax=Clostridium difficile RepID=T2V784_CLODI
Putative exported protein {ECO:0000313|EMBL:CCL23817.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative exported protein
L3_069_000G1_scaffold_606_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10202..11158)
DNA (957bp) protein (319aa)
Diguanylate cyclase domain protein n=15 Tax=Clostridium difficile RepID=T2V8C8_CLODI
Putative diguanylate kinase signaling protein {ECO:0000313|EMBL:CCL23816.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative diguanylate kinase signaling protein
L3_069_000G1_scaffold_606_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11861..12856
DNA (996bp) protein (332aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=61 Tax=Clostridium difficile RepID=T2T944_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQG73718.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_000G1_scaffold_606_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12834..13697
DNA (864bp) protein (288aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=G6B9C0_CLODI
ABC transporter permease {ECO:0000313|EMBL:CKG75902.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter permease
L3_069_000G1_scaffold_606_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13694..14488
DNA (795bp) protein (265aa)
ABC-2 transporter family protein n=36 Tax=Clostridium difficile RepID=T3P6U7_CLODI
ABC-2 transporter family protein {ECO:0000313|EMBL:EQG73736.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC transporter permease
L3_069_000G1_scaffold_606_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14773..16152
DNA (1380bp) protein (460aa)
MatE family protein n=2 Tax=Clostridium difficile RepID=T4PE90_CLODI
MatE family protein {ECO:0000313|EMBL:EQI75644.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
multidrug efflux protein
L3_069_000G1_scaffold_606_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16514..18223
DNA (1710bp) protein (570aa)
Putative Membrane protein n=2 Tax=Clostridium difficile RepID=U4C2U1_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG73757.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_069_000G1_scaffold_606_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18238..19110
DNA (873bp) protein (291aa)
ABC transporter, ATP-binding protein SagG family protein n=65 Tax=Clostridium difficile RepID=G6BUY3_CLODI
ABC transporter, ATP-binding protein SagG family protein {ECO:0000313|EMBL:CDS85035.1}; Abc transporter, atp-binding protein {ECO:0000313|EMBL:CDS89547.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter ATP-binding protein
L3_069_000G1_scaffold_606_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19111..19899
DNA (789bp) protein (263aa)
Uncharacterized protein n=83 Tax=Clostridium difficile RepID=G6BUY4_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL24172.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_069_000G1_scaffold_606_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19995..20828)
DNA (834bp) protein (278aa)
Prenyltransferase-like family protein n=2 Tax=Clostridium difficile RepID=T4PDX8_CLODI
Prenyltransferase-like family protein {ECO:0000313|EMBL:EQE59316.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_069_000G1_scaffold_606_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20896..21525)
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PE29_CLODI
conserved hypothetical protein
Domain of uncharacterised function (DUF3786) {ECO:0000313|EMBL:CKG77061.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99974.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_069_000G1_scaffold_606_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21836..22495
DNA (660bp) protein (220aa)
Response regulator n=2 Tax=Clostridium difficile RepID=T4P885_CLODI
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ70217.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_069_000G1_scaffold_606_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22706..23764
DNA (1059bp) protein (353aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=G6BAF8_CLODI
hypothetical protein
TIGR00374 family protein {ECO:0000313|EMBL:EQG73774.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_000G1_scaffold_606_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24015..24431
DNA (417bp) protein (139aa)
Formate dehydrogenase h n=6 Tax=Clostridium difficile RepID=C9XRR8_CLODC
fdhF; formate dehydrogenase h
Molybdopterin oxidoreductase family protein {ECO:0000313|EMBL:EQE59318.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_000G1_scaffold_606_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24480..26159
DNA (1680bp) protein (560aa)
fdhF; Formate dehydrogenase-H (selenocysteine) (EC:1.2.1.2)
Formate dehydrogenase h {ECO:0000313|EMBL:CKG77175.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CKG77175.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Formate dehydrogenase-H (Selenocysteine) n=259 Tax=Clostridium difficile RepID=Q180G2_CLOD6
L3_069_000G1_scaffold_606_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26208..27041
DNA (834bp) protein (278aa)
Protein FdhD homolog n=57 Tax=Clostridium difficile RepID=G6BUZ1_CLODI
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
fdhD; formate dehydrogenase accessory protein
L3_069_000G1_scaffold_606_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27010..27225
DNA (216bp) protein (72aa)
Uncharacterized protein n=27 Tax=Clostridium difficile RepID=T2V6Y5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS85053.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_069_000G1_scaffold_606_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27283..27834
DNA (552bp) protein (184aa)
4Fe-4S binding domain protein n=129 Tax=Clostridium difficile RepID=C9XRR5_CLODC
hydN2; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQE59308.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_069_000G1_scaffold_606_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27859..29235
DNA (1377bp) protein (459aa)
Iron hydrogenase {ECO:0000313|EMBL:CCK88705.1}; EC=1.12.7.2 {ECO:0000313|EMBL:CCK88705.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Iron hydrogenase n=191 Tax=Clostridium difficile RepID=Q180F8_CLOD6
hydA; hydrogenase
L3_069_000G1_scaffold_606_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29235..29750
DNA (516bp) protein (172aa)
Electron transport protein n=155 Tax=Clostridium difficile RepID=C9XRR3_CLODC
hydN1; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQG73771.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_069_000G1_scaffold_606_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29828..31111)
DNA (1284bp) protein (428aa)
Sugar (And other) transporter family protein n=142 Tax=Clostridium difficile RepID=T3G0V2_CLODC
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL31589.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 168 in total

View Taxonomy