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L3_069_000G1_scaffold_2558

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_000G1_scaffold_2558_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..626)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QE63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88965.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
multiple sugar recognition domains
L3_069_000G1_scaffold_2558_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(886..1263)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=2 Tax=Clostridium RepID=B6FP53_9CLOT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L12P
L3_069_000G1_scaffold_2558_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1350..1883)
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FP54_9CLOT
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_069_000G1_scaffold_2558_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2228..2920)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=2 Tax=Clostridium RepID=B6FP56_9CLOT
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosomal protein L1, bacterial/chloroplast
L3_069_000G1_scaffold_2558_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2982..3407)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=2 Tax=Clostridium RepID=B6FP57_9CLOT
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
50S ribosomal protein L11
L3_069_000G1_scaffold_2558_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3460..3975)
DNA (516bp) protein (172aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP58_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcription antitermination protein nusG
L3_069_000G1_scaffold_2558_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4006..4206)
DNA (201bp) protein (67aa)
Protein translocase subunit SecE n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP59_9CLOT
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
protein translocase subunit secE/sec61 gamma
L3_069_000G1_scaffold_2558_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4558..10881)
DNA (6324bp) protein (2108aa)
lacZ; beta-galactosidase (EC:3.2.1.23)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82167.1}; Flags: Fragment;; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_069_000G1_scaffold_2558_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11194..17121)
DNA (5928bp) protein (1976aa)
lacZ; beta-galactosidase (EC:3.2.1.23)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FP64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82169.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_069_000G1_scaffold_2558_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17428..18012
DNA (585bp) protein (195aa)
50S ribosomal protein L25 n=2 Tax=Clostridium RepID=B6FP66_9CLOT
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L25P
L3_069_000G1_scaffold_2558_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18030..18626)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82173.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_069_000G1_scaffold_2558_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18796..19572)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMN5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22099.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_2558_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19575..19967)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22100.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
GntR family transcriptional regulator
L3_069_000G1_scaffold_2558_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20091..20828)
DNA (738bp) protein (246aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Parvulin-like peptidyl-prolyl isomerase (EC:5.2.1.8)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP71_9CLOT
L3_069_000G1_scaffold_2558_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20920..21558)
DNA (639bp) protein (213aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FP72_9CLOT
L3_069_000G1_scaffold_2558_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21555..22589)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=B6FP77_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22103.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_2558_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22580..22969)
DNA (390bp) protein (130aa)
Nucleotidyltransferase substrate-binding family protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMN9_9CLOT
Nucleotidyltransferase substrate-binding family protein {ECO:0000313|EMBL:CDC22104.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
nucleotidyltransferase substrate binding protein, HI0074 family
L3_069_000G1_scaffold_2558_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22956..23249)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22105.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Nucleotidyltransferase domain.
L3_069_000G1_scaffold_2558_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23406..23690)
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP79_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82160.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uncharacterized protein conserved in bacteria (DUF2325).
L3_069_000G1_scaffold_2558_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23703..24131)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22107.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
flavodoxin
L3_069_000G1_scaffold_2558_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24144..24761)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCT9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22108.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_2558_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24933..25394
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22109.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, MarR family
L3_069_000G1_scaffold_2558_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25375..26748
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22110.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
MATE efflux family protein
L3_069_000G1_scaffold_2558_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26784..28442)
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22111.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type multidrug transport system, ATPase and permease components
L3_069_000G1_scaffold_2558_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28435..30177)
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22112.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
L3_069_000G1_scaffold_2558_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30167..30373)
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP87_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22113.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_2558_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30384..30716)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FP88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22114.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_069_000G1_scaffold_2558_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30949..31173
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PEY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22115.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_069_000G1_scaffold_2558_29
unknown

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comp(31489..31674)
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying 29 items

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